myRT

myRT report for GCA_900618095.1_NCTC10913

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Seq: UYIN01000008.1 (768348 bp)
Overview 1 RT 1: 272244-276136 bp 2 RT 2: 585925-592036 bp Neighborhood of RT #1 [272244, 276237] YfiP RVT-GII GIIM VOC_Bs_YwkD_like Neighborhood of RT #2 [585925, 592053] PRK00784 RVT-GII GIIM PRK11107 RpfG Feature: gene Location: 272244-272882 bp Feature: domain Description: YfiP Location: 272289-272856 bp Feature: domain Description: YfiP Location: 272289-272856 bp Feature: gene Location: 272906-273058 bp Feature: gene Location: 273229-274587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273529-274147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273529-2741 47 bp Feature: domain Description: GIIM Note: maturase Location: 274198-274429 bp Feature: domain Description: GIIM Note: maturase Location: 2741 98-274429 bp Feature: gene Location: 275296-275532 bp Feature: gene Location: 275821-276237 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 275845-276136 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 275845-2761 36 bp Feature: gene Location: 585925-587427 bp Feature: domain Description: PRK00784 Location: 585934-587416 bp Feature: domain Description: PRK00784 Location: 585934-58741 6 bp Feature: gene Location: 587441-587953 bp Feature: gene Location: 588502-589860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588802-589420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588802-589420 bp Feature: domain Description: GIIM Note: maturase Location: 589471-589702 bp Feature: domain Description: GIIM Note: maturase Location: 589471 -589702 bp Feature: gene Location: 589947-590990 bp Feature: domain Description: PRK11107 Location: 589974-590634 bp Feature: domain Description: PRK1 1 1 07 Location: 589974-590634 bp Feature: gene Location: 591004-592053 bp Feature: domain Description: RpfG Location: 591013-592036 bp Feature: domain Description: RpfG Location: 591 01 3-592036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfiP (COG3148), RVT-GII, GIIM (pfam08388), VOC_Bs_YwkD_like (cd08352), PRK00784 (cobyric acid synthase), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), RpfG (COG3437)

Seq: UYIN01000024.1 (129218 bp)
Overview 1 RT 1: 77906-83565 bp Neighborhood of RT #1 [77906, 83565] RVT-GII GIIM Feature: gene Location: 77906-78892 bp Feature: gene Location: 78912-79412 bp Feature: gene Location: 80451-81809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80751-81369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80751-81369 bp Feature: domain Description: GIIM Note: maturase Location: 81420-81651 bp Feature: domain Description: GIIM Note: maturase Location: 8142 0-81651 bp Feature: gene Location: 82565-82699 bp Feature: gene Location: 83311-83565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: UYIN01000002.1 (114411 bp)
Overview 1 RT 1: 65542-72159 bp Neighborhood of RT #1 [65542, 72159] pbuX PRK09219 RVT-GII GIIM Glucosaminidase COG5263 COG5263 CW_binding_1 CW_binding_1 AmiC Feature: gene Location: 65542-66885 bp Feature: domain Description: pbuX Location: 65668-66877 bp Feature: domain Description: pbuX Location: 65668-66877 bp Feature: gene Location: 66916-67485 bp Feature: domain Description: PRK09219 Location: 66919-67480 bp Feature: domain Description: PRK09219 Location: 66919-67480 bp Feature: gene Location: 68116-69474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68416-69034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68416-6903 4 bp Feature: domain Description: GIIM Note: maturase Location: 69085-69316 bp Feature: domain Description: GIIM Note: maturase Location: 69085-693 16 bp Feature: gene Location: 69565-71769 bp Feature: domain Description: Glucosaminidase Location: 69766-70147 bp Feature: domain Description: Glucosaminidase Location: 69766-70147 bp Feature: domain Description: COG5263 Location: 70318-70633 bp Feature: domain Description: COG5263 Location: 703 18-7063 3 bp Feature: domain Description: COG5263 Location: 70636-70864 bp Feature: domain Description: COG5263 Location: 7063 6-70864 bp Feature: domain Description: CW_binding_1 Location: 70876-70933 bp Feature: domain Description: CW_binding_1 Location: 70876-7093 3 bp Feature: domain Description: CW_binding_1 Location: 70942-70990 bp Feature: domain Description: CW_binding_1 Location: 70942-70990 bp Feature: domain Description: AmiC Location: 71062-71764 bp Feature: domain Description: AmiC Location: 71062-71764 bp Feature: gene Location: 71884-72159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pbuX (TIGR03173), PRK09219 (xanthine phosphoribosyltransferase; Validated), RVT-GII, GIIM (pfam08388), Glucosaminidase (pfam01832), COG5263 (Glucan-binding domain (YG repeat) ), CW_binding_1 (pfam01473), AmiC (COG0860)

Seq: UYIN01000022.1 (248989 bp)
Overview 1 RT 1: 196040-202126 bp Neighborhood of RT #1 [196040, 202134] PRK07105 FrwC RVT-GII GIIM PRK09765 RhaT Feature: gene Location: 196040-196897 bp Feature: domain Description: PRK07105 Location: 196049-196883 bp Feature: domain Description: PRK07105 Location: 19604 9-196883 bp Feature: gene Location: 197093-197251 bp Feature: domain Description: FrwC Location: 197096-197240 bp Feature: domain Description: FrwC Location: 197096-19724 0 bp Feature: gene Location: 197386-198744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197686-198304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197686-198304 bp Feature: domain Description: GIIM Note: maturase Location: 198355-198586 bp Feature: domain Description: GIIM Note: maturase Location: 198355-198586 bp Feature: gene Location: 199197-200942 bp Feature: domain Description: PRK09765 Location: 199251-200919 bp Feature: domain Description: PRK09765 Location: 199251-200919 bp Feature: gene Location: 201274-202134 bp Feature: domain Description: RhaT Location: 201295-202126 bp Feature: domain Description: RhaT Location: 201295-202126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07105 (pyridoxamine kinase; Validated), FrwC (COG1299), RVT-GII, GIIM (pfam08388), PRK09765 (PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional), RhaT (TIGR00776)

Seq: UYIN01000021.1 (439087 bp)
Overview 1 RT 1: 72749-79918 bp 2 RT 2: 144917-150510 bp Neighborhood of RT #1 [72749, 79918] PRK09261 RVT-GII GIIM HTH_28 HTH_28 PHA02517 RVT-GII PRK06827 Neighborhood of RT #2 [144917, 150566] PBP2_GltC_like LysR RVT-GII P-type_ATPase_Ca_prok P-type_ATPase_SERCA HTH_MARR Feature: gene Location: 72749-73777 bp Feature: domain Description: PRK09261 Location: 72755-73775 bp Feature: domain Description: PRK09261 Location: 7275 5 -73775 bp Feature: gene Location: 74220-74417 bp Feature: gene Location: 74530-75285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74545-74845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745 45 -74845 bp Feature: domain Description: GIIM Note: maturase Location: 74896-75127 bp Feature: domain Description: GIIM Note: maturase Location: 74896-75 127 bp Feature: gene Location: 75326-75907 bp Feature: domain Description: HTH_28 Location: 75350-75485 bp Feature: domain Description: HTH_28 Location: 75 35 0-75 485 bp Feature: domain Description: HTH_28 Location: 75527-75683 bp Feature: domain Description: HTH_28 Location: 75 5 27-75 683 bp Feature: gene Location: 75949-76749 bp Feature: domain Description: PHA02517 Location: 75961-76729 bp Feature: domain Description: PHA025 17 Location: 75 961-76729 bp Feature: gene Location: 76791-77489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77148-77478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77148-77478 bp Feature: gene Location: 77954-79051 bp Feature: domain Description: PRK06827 Location: 77963-79040 bp Feature: domain Description: PRK06827 Location: 77963-79040 bp Feature: gene Location: 79280-79918 bp Feature: gene Location: 144917-145453 bp Feature: domain Description: PBP2_GltC_like Location: 144923-145400 bp Feature: domain Description: PBP2_GltC_like Location: 144923-145 400 bp Feature: gene Location: 145468-145809 bp Feature: domain Description: LysR Location: 145483-145771 bp Feature: domain Description: LysR Location: 145 483-145 771 bp Feature: gene Location: 146565-146984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146865-146964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146865 -146964 bp Feature: gene Location: 147292-149955 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 147358-149485 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 14735 8-149485 bp Feature: domain Description: P-type_ATPase_SERCA Location: 149623-149902 bp Feature: domain Description: P-type_ATPase_SERCA Location: 149623-149902 bp Feature: gene Location: 150117-150566 bp Feature: domain Description: HTH_MARR Location: 150204-150510 bp Feature: domain Description: HTH_MARR Location: 15 0204-15 05 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09261 (phospho-2-dehydro-3-deoxyheptonate aldolase; Validated), RVT-GII, GIIM (pfam08388), HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed), PRK06827 (phosphoribosylpyrophosphate synthetase; Provisional), PBP2_GltC_like (cd08434), LysR (COG0583), P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083)
HTH_MARR (smart00347)

Seq: UYIN01000019.1 (641116 bp)
Overview 1 RT 1: 3-3443 bp 2 RT 2: 463039-468474 bp 3 RT 3: 624861-631423 bp Neighborhood of RT #1 [3, 3454] RVT-GII GIIM MhpC Neighborhood of RT #2 [463039, 468474] NapF HTH_YyaN RVT-GII GIIM GH43_XylA-like CBM6_xylanase-like Neighborhood of RT #3 [624861, 631443] Tar 4HB_MCP_1 HAMP Tar RVT-GII GIIM XylH PRK13549 Feature: gene Location: 3-1241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303-921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303-921 bp Feature: domain Description: GIIM Note: maturase Location: 972-1200 bp Feature: domain Description: GIIM Note: maturase Location: 972-1200 bp Feature: gene Location: 1770-2483 bp Feature: gene Location: 2624-3454 bp Feature: domain Description: MhpC Location: 2666-3443 bp Feature: domain Description: MhpC Location: 26 6 6 -3443 bp Feature: gene Location: 463039-463806 bp Feature: domain Description: NapF Location: 463495-463747 bp Feature: domain Description: NapF Location: 46 3495-46 3747 bp Feature: gene Location: 463936-464322 bp Feature: domain Description: HTH_YyaN Location: 463942-464278 bp Feature: domain Description: HTH_YyaN Location: 46 3942-46 4278 bp Feature: gene Location: 464814-466172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465114-465732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 5114-46 5732 bp Feature: domain Description: GIIM Note: maturase Location: 465783-466014 bp Feature: domain Description: GIIM Note: maturase Location: 46 5783-46 6 014 bp Feature: gene Location: 466757-468202 bp Feature: domain Description: GH43_XylA-like Location: 466808-467735 bp Feature: domain Description: GH43_XylA-like Location: 46 6 808-46 7735 bp Feature: domain Description: CBM6_xylanase-like Location: 467888-468191 bp Feature: domain Description: CBM6 _xylanase-like Location: 46 7888-46 8191 bp Feature: gene Location: 468247-468474 bp Feature: gene Location: 624861-625391 bp Feature: domain Description: Tar Location: 624876-625374 bp Feature: domain Description: Tar Location: 6 24876 -6 25374 bp Feature: gene Location: 625457-626587 bp Feature: domain Description: 4HB_MCP_1 Location: 625508-626039 bp Feature: domain Description: 4HB_MCP_1 Location: 6 25508-6 26 039 bp Feature: domain Description: HAMP Location: 626156-626249 bp Feature: domain Description: HAMP Location: 6 26 156 -6 26 249 bp Feature: domain Description: Tar Location: 626279-626573 bp Feature: domain Description: Tar Location: 6 26 279-6 26 573 bp Feature: gene Location: 626745-628103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627045-627663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 27045-6 276 6 3 bp Feature: domain Description: GIIM Note: maturase Location: 627714-627945 bp Feature: domain Description: GIIM Note: maturase Location: 6 27714-6 27945 bp Feature: gene Location: 628682-629869 bp Feature: domain Description: XylH Location: 628700-629864 bp Feature: domain Description: XylH Location: 6 28700-6 2986 4 bp Feature: gene Location: 629869-631443 bp Feature: domain Description: PRK13549 Location: 629902-631423 bp Feature: domain Description: PRK13549 Location: 6 29902-6 31423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MhpC (COG0596), NapF (COG1145), HTH_YyaN (cd01109), GH43_XylA-like (cd18620), CBM6_xylanase-like (cd04084), Tar (COG0840), 4HB_MCP_1 (pfam12729), HAMP (smart00304)
XylH (COG4214), PRK13549 (xylose transporter ATP-binding subunit; Provisional)

Seq: UYIN01000006.1 (188492 bp)
Overview 1 RT 1: 93245-99860 bp Neighborhood of RT #1 [93245, 99889] MdlB hisS RVT-GII GIIM Fbp2 Feature: gene Location: 93245-93442 bp Feature: domain Description: MdlB Location: 93257-93419 bp Feature: domain Description: MdlB Location: 93257 -93419 bp Feature: gene Location: 93711-95018 bp Feature: domain Description: hisS Location: 93741-95016 bp Feature: domain Description: hisS Location: 937 41-95016 bp Feature: gene Location: 95132-96490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95432-96050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95432-96050 bp Feature: domain Description: GIIM Note: maturase Location: 96101-96332 bp Feature: domain Description: GIIM Note: maturase Location: 96101-96332 bp Feature: gene Location: 97200-97781 bp Feature: gene Location: 97880-99889 bp Feature: domain Description: Fbp2 Location: 97940-99860 bp Feature: domain Description: Fbp2 Location: 97 940-99860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), hisS (TIGR00442), RVT-GII, GIIM (pfam08388), Fbp2 (COG3855)

Seq: UYIN01000001.1 (1393288 bp)
Overview 1 RT 1: 1201924-1207770 bp Neighborhood of RT #1 [1201924, 1207781] PRK09213 PRK13259 RVT-GII GIIM glmU PRK01259 Feature: gene Location: 1201924-1202748 bp Feature: domain Description: PRK09213 Location: 1201939-1202743 bp Feature: domain Description: PRK09213 Location: 1201939-1202743 bp Feature: gene Location: 1203038-1203313 bp Feature: domain Description: PRK13259 Location: 1203041-1203305 bp Feature: domain Description: PRK13259 Location: 1203041-1203305 bp Feature: gene Location: 1203837-1205195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1204137-1204755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1204137-1204755 bp Feature: domain Description: GIIM Note: maturase Location: 1204806-1205037 bp Feature: domain Description: GIIM Note: maturase Location: 12048 06-1205037 bp Feature: gene Location: 1205396-1206766 bp Feature: domain Description: glmU Location: 1205399-1206761 bp Feature: domain Description: glmU Location: 1205399-1206761 bp Feature: gene Location: 1206816-1207781 bp Feature: domain Description: PRK01259 Location: 1206840-1207770 bp Feature: domain Description: PRK01259 Location: 12068 40-1207770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09213 (pur operon repressor; Provisional), PRK13259 (septation regulator SpoVG), RVT-GII, GIIM (pfam08388), glmU (TIGR01173), PRK01259 (ribose-phosphate diphosphokinase)