myRT

myRT report for GCA_900624775.1_82B11

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Seq: UYXH01000005.1 (365475 bp)
Overview 1 RT 1: 91384-95317 bp Neighborhood of RT #1 [91384, 95317] RVT-UG27 Feature: gene Location: 91384-92031 bp Feature: gene Location: 92045-92713 bp Feature: gene Location: 92706-93968 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 92898-93534 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 92898-93534 bp Feature: gene Location: 94291-94788 bp Feature: gene Location: 94838-95317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: UYXH01000035.1 (2420 bp)
Overview 1 RT 1: 122-2419 bp Neighborhood of RT #1 [122, 2419] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: gene Location: 2222-2419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: UYXH01000001.1 (672639 bp)
Overview 1 RT 1: 15083-19153 bp 2 RT 2: 427368-432560 bp 3 RT 3: 668197-672638 bp Neighborhood of RT #1 [15083, 19230] RVT-DGRs TipAS COG2369 LPD3 Neighborhood of RT #2 [427368, 432571] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Neighborhood of RT #3 [668197, 672638] TraG-D_C RVT-GII Intron_maturas2 HNHc Feature: gene Location: 15083-15325 bp Feature: gene Location: 15529-16014 bp Feature: gene Location: 16011-17312 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16224-16821 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16224-16821 bp Feature: gene Location: 17688-17921 bp Feature: gene Location: 18019-19230 bp Feature: domain Description: TipAS Location: 18043-18346 bp Feature: domain Description: TipAS Location: 18043 -183 46 bp Feature: domain Description: COG2369 Location: 18466-18652 bp Feature: domain Description: COG23 69 Location: 18466-18652 bp Feature: domain Description: LPD3 Location: 18871-19153 bp Feature: domain Description: LPD3 Location: 18871-19153 bp Feature: gene Location: 427368-428306 bp Feature: domain Description: Bac_Flav_CT_G Location: 427371-428292 bp Feature: domain Description: Bac_Flav_CT_G Location: 4273 71-428292 bp Feature: gene Location: 428485-428634 bp Feature: gene Location: 428890-430551 bp Feature: domain Description: RVT_N Location: 428944-429187 bp Feature: domain Description: RVT_N Location: 428944-429187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429232-429880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42923 2-429880 bp Feature: domain Description: GIIM Note: maturase Location: 429934-430165 bp Feature: domain Description: GIIM Note: maturase Location: 42993 4-43 0165 bp Feature: gene Location: 430548-432242 bp Feature: domain Description: Bac_Flav_CT_G Location: 430668-432234 bp Feature: domain Description: Bac_Flav_CT_G Location: 43 0668-43 223 4 bp Feature: gene Location: 432257-432571 bp Feature: domain Description: DUF3876 Location: 432311-432560 bp Feature: domain Description: DUF3 876 Location: 43 23 11-43 2560 bp Feature: gene Location: 668197-668637 bp Feature: gene Location: 668905-670083 bp Feature: domain Description: TraG-D_C Location: 669430-669763 bp Feature: domain Description: TraG-D_C Location: 66943 0-669763 bp Feature: gene Location: 670070-671875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670334-671156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6703 3 4-671156 bp Feature: domain Description: Intron_maturas2 Location: 671234-671564 bp Feature: domain Description: Intron_maturas2 Location: 67123 4-671564 bp Feature: domain Description: HNHc Note: nucleases Location: 671708-671852 bp Feature: domain Description: HNHc Note: nucleases Location: 671708-671852 bp Feature: gene Location: 671877-672392 bp Feature: gene Location: 672420-672638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992), TraG-D_C (pfam12696)
Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: UYXH01000015.1 (72384 bp)
Overview 1 RT 1: 119-3013 bp Neighborhood of RT #1 [119, 3561] RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 119-463 bp Feature: gene Location: 450-2282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-1554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-1554 bp Feature: domain Description: Intron_maturas2 Location: 1629-1938 bp Feature: domain Description: Intron_maturas2 Location: 1629-1938 bp Feature: domain Description: HNHc Note: nucleases Location: 2112-2256 bp Feature: domain Description: HNHc Note: nucleases Location: 2112-2256 bp Feature: gene Location: 2470-2709 bp Feature: gene Location: 2830-3561 bp Feature: domain Description: YWFCY Location: 2836-3013 bp Feature: domain Description: YWFCY Location: 2836-3013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)