myRT

myRT report for GCA_900624785.1_82A12

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Seq: UYXF01000020.1 (100043 bp)
Overview 1 RT 1: 44697-53661 bp Neighborhood of RT #1 [44697, 53663] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 44697-45611 bp Feature: domain Description: RNase_Z Location: 44712-45603 bp Feature: domain Description: RNase_Z Location: 4471 2-45603 bp Feature: gene Location: 45761-47554 bp Feature: domain Description: rpsA Location: 45839-47447 bp Feature: domain Description: rpsA Location: 45839-47447 bp Feature: gene Location: 47696-48808 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48011-48560 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4801 1 -48560 bp Feature: gene Location: 49015-51234 bp Feature: gene Location: 51474-53663 bp Feature: domain Description: GlnA3 Location: 51549-53661 bp Feature: domain Description: GlnA3 Location: 51 549-53661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: UYXF01000066.1 (2511 bp)
Overview 1 RT 1: 575-2315 bp Neighborhood of RT #1 [575, 2386] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 575-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1661 bp Feature: domain Description: Intron_maturas2 Location: 1850-2060 bp Feature: domain Description: Intron_maturas2 Location: 1850-2 060 bp Feature: domain Description: HNHc Note: nucleases Location: 2210-2315 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 10-2 315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: UYXF01000005.1 (300005 bp)
Overview 1 RT 1: 242980-247386 bp Neighborhood of RT #1 [242980, 247502] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 242980-243147 bp Feature: gene Location: 243571-243861 bp Feature: domain Description: Cas2_I_II_III Location: 243598-243808 bp Feature: domain Description: Cas2_I_II_III Location: 243 598-243 808 bp Feature: gene Location: 243855-246125 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 244062-244668 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 244062-244668 bp Feature: domain Description: Cas1_I-II-III Location: 245127-246084 bp Feature: domain Description: Cas1_I-II-III Location: 245127-246084 bp Feature: gene Location: 246145-247095 bp Feature: domain Description: Cmr6_III-B Location: 246307-247084 bp Feature: domain Description: Cmr6_III-B Location: 2463 07-247084 bp Feature: gene Location: 247092-247502 bp Feature: domain Description: Cas_Cmr5 Location: 247140-247386 bp Feature: domain Description: Cas_Cmr5 Location: 247140-2473 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: UYXF01000035.1 (47519 bp)
Overview 1 RT 1: 562-3444 bp Neighborhood of RT #1 [562, 3444] RVT-GII GIIM Feature: gene Location: 562-813 bp Feature: gene Location: 825-989 bp Feature: gene Location: 1222-2517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417-2032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 17-2032 bp Feature: domain Description: GIIM Note: maturase Location: 2104-2317 bp Feature: domain Description: GIIM Note: maturase Location: 2104 -2317 bp Feature: gene Location: 2851-3054 bp Feature: gene Location: 3088-3444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)