myRT

myRT report for GCA_900624855.1_82B7

Download annotations/find similar RTs

Seq: UYXM01000121.1 (2468 bp)
Overview 1 RT 1: 115-2081 bp Neighborhood of RT #1 [115, 2081] RVT_N RVT-GII GIIM Feature: gene Location: 115-1788 bp Feature: domain Description: RVT_N Location: 169-412 bp Feature: domain Description: RVT_N Location: 1 69-41 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1 1 05 bp Feature: domain Description: GIIM Note: maturase Location: 1159-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 59-1 390 bp Feature: gene Location: 1770-2081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: UYXM01000074.1 (23589 bp)
Overview 1 RT 1: 18258-22107 bp Neighborhood of RT #1 [18258, 22107] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Feature: gene Location: 18258-19022 bp Feature: domain Description: INT_RitB_C_like Location: 18339-18942 bp Feature: domain Description: INT_RitB_C_like Location: 18339-18942 bp Feature: gene Location: 19006-19932 bp Feature: domain Description: Phage_int_SAM_1 Location: 19051-19297 bp Feature: domain Description: Phage_int_SAM_1 Location: 19051-192 97 bp Feature: domain Description: INT_RitC_C_like Location: 19387-19930 bp Feature: domain Description: INT_RitC_C_like Location: 19387-19930 bp Feature: gene Location: 20011-20742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20257-20644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 57-2 0644 bp Feature: gene Location: 21340-21795 bp Feature: gene Location: 21940-22107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII

Seq: UYXM01000119.1 (2489 bp)
Overview 1 RT 1: 3-2346 bp Neighborhood of RT #1 [3, 2372] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-164 bp Feature: gene Location: 564-2372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1650 bp Feature: domain Description: Intron_maturas2 Location: 1839-2091 bp Feature: domain Description: Intron_maturas2 Location: 183 9-2091 bp Feature: domain Description: HNHc Note: nucleases Location: 2196-2346 bp Feature: domain Description: HNHc Note: nucleases Location: 2196-23 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: UYXM01000034.1 (77663 bp)
Overview 1 RT 1: 56720-61821 bp Neighborhood of RT #1 [56720, 61826] HptA MFS_DtpA_like RVT-Retrons COG1237 Feature: gene Location: 56720-57256 bp Feature: domain Description: HptA Location: 56738-57248 bp Feature: domain Description: HptA Location: 56738-5724 8 bp Feature: gene Location: 57296-58894 bp Feature: domain Description: MFS_DtpA_like Location: 57377-58865 bp Feature: domain Description: MFS_DtpA_like Location: 57377-58865 bp Feature: gene Location: 59106-60152 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59343-59895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5934 3-59895 bp Feature: gene Location: 60689-60958 bp Feature: gene Location: 61020-61826 bp Feature: domain Description: COG1237 Location: 61023-61821 bp Feature: domain Description: COG1237 Location: 61023-61821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HptA (COG0634), MFS_DtpA_like (cd17346), RVT-Retrons, COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II )

Seq: UYXM01000118.1 (2518 bp)
Overview 1 RT 1: 115-2319 bp Neighborhood of RT #1 [115, 2319] RVT-GII Intron_maturas2 Feature: gene Location: 115-1926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: domain Description: Intron_maturas2 Location: 1339-1576 bp Feature: domain Description: Intron_maturas2 Location: 1339-15 76 bp Feature: gene Location: 1947-2087 bp Feature: gene Location: 2185-2319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: UYXM01000018.1 (127522 bp)
Overview 1 RT 1: 78623-88180 bp Neighborhood of RT #1 [78623, 88180] Laminin_G_3 Laminin_G_3 pfam08757 RVT-DGRs Feature: gene Location: 78623-85465 bp Feature: domain Description: Laminin_G_3 Location: 80252-80360 bp Feature: domain Description: Laminin_G_3 Location: 80252-8036 0 bp Feature: domain Description: Laminin_G_3 Location: 80969-81389 bp Feature: domain Description: Laminin_G_3 Location: 8096 9-81389 bp Feature: domain Description: pfam08757 Location: 81650-82502 bp Feature: domain Description: pfam08757 Location: 816 50-82502 bp Feature: gene Location: 85630-85866 bp Feature: gene Location: 85962-87266 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86175-86769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86 175-86 76 9 bp Feature: gene Location: 87266-87751 bp Feature: gene Location: 87938-88180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), RVT-DGRs

Seq: UYXM01000003.1 (273972 bp)
Overview 1 RT 1: 147272-153352 bp Neighborhood of RT #1 [147272, 153420] PTZ00075 YfhO YfhO RVT-GII group_II_RT_mat DUF4890 Feature: gene Location: 147272-148690 bp Feature: domain Description: PTZ00075 Location: 147305-148688 bp Feature: domain Description: PTZ0007 5 Location: 147 305-148688 bp Feature: gene Location: 148788-151295 bp Feature: domain Description: YfhO Location: 149790-150534 bp Feature: domain Description: YfhO Location: 1497 90-150534 bp Feature: domain Description: YfhO Location: 150990-151275 bp Feature: domain Description: YfhO Location: 150990-15127 5 bp Feature: gene Location: 151420-152391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151756-151912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517 56-151912 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 151912-152191 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 151912-152191 bp Feature: gene Location: 152605-152859 bp Feature: gene Location: 152884-153420 bp Feature: domain Description: DUF4890 Location: 152986-153352 bp Feature: domain Description: DUF4890 Location: 152986-153352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTZ00075 (Adenosylhomocysteinase; Provisional), YfhO (pfam09586), RVT-GII, group_II_RT_mat (TIGR04416), DUF4890 (pfam16231)

Seq: UYXM01000055.1 (42812 bp)
Overview 1 RT 1: 27857-32004 bp Neighborhood of RT #1 [27857, 32004] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 27857-29068 bp Feature: domain Description: TipAS Location: 27881-28184 bp Feature: domain Description: TipAS Location: 278 8 1-28 18 4 bp Feature: domain Description: COG2369 Location: 28304-28490 bp Feature: domain Description: COG2369 Location: 28 304-28 490 bp Feature: domain Description: LPD3 Location: 28709-28991 bp Feature: domain Description: LPD3 Location: 28 709-28 991 bp Feature: gene Location: 29166-29399 bp Feature: gene Location: 29775-31076 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29988-30585 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2998 8 -3058 5 bp Feature: gene Location: 31073-31558 bp Feature: gene Location: 31762-32004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: UYXM01000045.1 (59760 bp)
Overview 1 RT 1: 30237-37507 bp Neighborhood of RT #1 [30237, 37507] DUF262 DUF1524 RVT-UG8 RVT-UG3 DUF4041 Feature: gene Location: 30237-32183 bp Feature: domain Description: DUF262 Location: 30288-30849 bp Feature: domain Description: DUF262 Location: 30288-30849 bp Feature: domain Description: DUF1524 Location: 31656-32106 bp Feature: domain Description: DUF1524 Location: 31656-32106 bp Feature: gene Location: 32365-32802 bp Feature: gene Location: 33335-35518 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 33950-34400 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 339 50-34400 bp Feature: gene Location: 35515-36978 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 35971-36502 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 359 71-36502 bp Feature: domain Description: DUF4041 Location: 36562-36658 bp Feature: domain Description: DUF4041 Location: 36562-36658 bp Feature: gene Location: 37019-37186 bp Feature: gene Location: 37358-37507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), DUF1524 (pfam07510), RVT-UG8, RVT-UG3, DUF4041 (pfam13250)

Seq: UYXM01000108.1 (4544 bp)
Overview 1 RT 1: 1448-4409 bp Neighborhood of RT #1 [1448, 4441] DUF1738 RVT-GII Intron_maturas2 HNHc DUF1738 Feature: gene Location: 1448-1621 bp Feature: domain Description: DUF1738 Location: 1478-1598 bp Feature: domain Description: DUF1738 Location: 1478-1598 bp Feature: gene Location: 1663-2163 bp Feature: gene Location: 2176-3987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2440-3262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2440-3262 bp Feature: domain Description: Intron_maturas2 Location: 3331-3643 bp Feature: domain Description: Intron_maturas2 Location: 3331-3643 bp Feature: domain Description: HNHc Note: nucleases Location: 3814-3958 bp Feature: domain Description: HNHc Note: nucleases Location: 3814-3958 bp Feature: gene Location: 3977-4441 bp Feature: domain Description: DUF1738 Location: 4100-4409 bp Feature: domain Description: DUF1738 Location: 410 0-4409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)