myRT

myRT report for GCA_900634715.1_Dd1_Dg_vc

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Seq: CAAAFO010000080.1 (29980 bp)
Overview 1 RT 1: 23627-26061 bp Neighborhood of RT #1 [23627, 26061] COG3795 RVT-GII GIIM Feature: gene Location: 23627-24046 bp Feature: domain Description: COG3795 Location: 23636-23990 bp Feature: domain Description: COG3795 Location: 23636-23990 bp Feature: gene Location: 24399-24764 bp Feature: gene Location: 24911-25417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24917-24986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2491 7-24986 bp Feature: domain Description: GIIM Note: maturase Location: 25058-25286 bp Feature: domain Description: GIIM Note: maturase Location: 25058-25286 bp Feature: gene Location: 25543-25890 bp Feature: gene Location: 25918-26061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3795 (Uncharacterized conserved protein ), RVT-GII, GIIM (pfam08388)

Seq: CAAAFO010000062.1 (10045 bp)
Overview 1 RT 1: 1-3884 bp 2 RT 2: 7780-9913 bp Neighborhood of RT #1 [1, 3886] DDE_Tnp_1_4 RVT-GII GIIM MFS_NepI_like Neighborhood of RT #2 [7780, 10044] HATPase_RsbW-like RVT-GII GIIM Feature: gene Location: 1-768 bp Feature: domain Description: DDE_Tnp_1_4 Location: 46-610 bp Feature: domain Description: DDE_Tnp_1_4 Location: 46-610 bp Feature: gene Location: 508-963 bp Feature: gene Location: 1658-2995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2 609 bp Feature: domain Description: GIIM Note: maturase Location: 2684-2915 bp Feature: domain Description: GIIM Note: maturase Location: 2 684-2 915 bp Feature: gene Location: 3206-3634 bp Feature: gene Location: 3668-3886 bp Feature: domain Description: MFS_NepI_like Location: 3674-3884 bp Feature: domain Description: MFS_NepI_like Location: 3674-3884 bp Feature: gene Location: 7780-8262 bp Feature: gene Location: 8470-9294 bp Feature: domain Description: HATPase_RsbW-like Location: 9019-9265 bp Feature: domain Description: HATPase_RsbW-like Location: 9019-92 65 bp Feature: gene Location: 9328-10044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9334-9631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9334-9631 bp Feature: domain Description: GIIM Note: maturase Location: 9706-9913 bp Feature: domain Description: GIIM Note: maturase Location: 9706-9913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388), MFS_NepI_like (cd17324), HATPase_RsbW-like (cd16936)

Seq: CAAAFO010000066.1 (10122 bp)
Overview 1 RT 1: 8190-10122 bp Neighborhood of RT #1 [8190, 10121] RVT-GII GIIM Feature: gene Location: 8190-8435 bp Feature: gene Location: 8930-9211 bp Feature: gene Location: 9702-10121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9705-9939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9705-993 9 bp Feature: domain Description: GIIM Note: maturase Location: 10020-10122 bp Feature: domain Description: GIIM Note: maturase Location: 10020-10122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAAFO010000025.1 (12699 bp)
Overview 1 RT 1: 1-2143 bp Neighborhood of RT #1 [1, 2143] RVT-CRISPR-like Feature: gene Location: 1-588 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 202-589 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 202-589 bp Feature: gene Location: 1019-1246 bp Feature: gene Location: 1592-2143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: CAAAFO010000090.1 (36417 bp)
Overview 1 RT 1: 2268-5855 bp 2 RT 2: 12365-14918 bp Neighborhood of RT #1 [2268, 5855] RVT-GII Neighborhood of RT #2 [12365, 14918] RVT-UNC Feature: gene Location: 2268-2564 bp Feature: gene Location: 4331-4459 bp Feature: gene Location: 4679-5251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4682-5231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4682-5 231 bp Feature: gene Location: 5537-5674 bp Feature: gene Location: 5706-5855 bp Feature: gene Location: 12365-12640 bp Feature: gene Location: 12668-12988 bp Feature: gene Location: 13216-13716 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 13456-13696 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1345 6-13696 bp Feature: gene Location: 13887-14090 bp Feature: gene Location: 14595-14918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT-UG28b/RVT-DGRs/RVT-UG3(RVT-UNC)

Seq: CAAAFO010000024.1 (40430 bp)
Overview 1 RT 1: 37916-40058 bp Neighborhood of RT #1 [37916, 40429] Cas6 Cas2_I_II_III RVT-CRISPR Cas_Cas1 Feature: gene Location: 37916-38428 bp Feature: domain Description: Cas6 Location: 38015-38423 bp Feature: domain Description: Cas6 Location: 38015-38423 bp Feature: gene Location: 38838-39119 bp Feature: domain Description: Cas2_I_II_III Location: 38847-39081 bp Feature: domain Description: Cas2_I_II_III Location: 38847-39081 bp Feature: gene Location: 39116-40429 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39119-39347 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39119-39347 bp Feature: domain Description: Cas_Cas1 Location: 39416-40058 bp Feature: domain Description: Cas_Cas1 Location: 39416 -40058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6 (pfam09559), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas_Cas1 (pfam01867)

Seq: CAAAFO010000122.1 (47236 bp)
Overview 1 RT 1: 2-5438 bp Neighborhood of RT #1 [2, 5836] DDE_Tnp_1 DUF4096 RVT-GII YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x RHS_repeat YD_repeat_2x Rhs_assc_core Feature: gene Location: 2-217 bp Feature: domain Description: DDE_Tnp_1 Location: 8-209 bp Feature: domain Description: DDE_Tnp_1 Location: 8-209 bp Feature: gene Location: 295-852 bp Feature: domain Description: DUF4096 Location: 370-580 bp Feature: domain Description: DUF4096 Location: 37 0-580 bp Feature: gene Location: 1141-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1150-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1150-1360 bp Feature: gene Location: 1770-2117 bp Feature: gene Location: 2120-5836 bp Feature: domain Description: YD_repeat_2x Location: 2324-2429 bp Feature: domain Description: YD_repeat_2x Location: 2324-2429 bp Feature: domain Description: YD_repeat_2x Location: 2594-2699 bp Feature: domain Description: YD_repeat_2x Location: 2594-2699 bp Feature: domain Description: YD_repeat_2x Location: 2768-2888 bp Feature: domain Description: YD_repeat_2x Location: 27 68-2888 bp Feature: domain Description: YD_repeat_2x Location: 2960-3080 bp Feature: domain Description: YD_repeat_2x Location: 2960-3080 bp Feature: domain Description: YD_repeat_2x Location: 3116-3206 bp Feature: domain Description: YD_repeat_2x Location: 3116-3206 bp Feature: domain Description: YD_repeat_2x Location: 3272-3389 bp Feature: domain Description: YD_repeat_2x Location: 327 2-3389 bp Feature: domain Description: YD_repeat_2x Location: 3398-3512 bp Feature: domain Description: YD_repeat_2x Location: 3398-3512 bp Feature: domain Description: YD_repeat_2x Location: 3521-3623 bp Feature: domain Description: YD_repeat_2x Location: 3521-3623 bp Feature: domain Description: YD_repeat_2x Location: 4187-4295 bp Feature: domain Description: YD_repeat_2x Location: 4187 -4295 bp Feature: domain Description: YD_repeat_2x Location: 4436-4514 bp Feature: domain Description: YD_repeat_2x Location: 4436-4514 bp Feature: domain Description: RHS_repeat Location: 4616-4658 bp Feature: domain Description: RHS_repeat Location: 4616-4658 bp Feature: domain Description: YD_repeat_2x Location: 4694-4760 bp Feature: domain Description: YD_repeat_2x Location: 4694-47 60 bp Feature: domain Description: Rhs_assc_core Location: 5219-5438 bp Feature: domain Description: Rhs_assc_core Location: 5219-5438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), DUF4096 (pfam13340), RVT-GII, YD_repeat_2x (TIGR01643), RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696)

Seq: CAAAFO010000110.1 (10174 bp)
Overview 1 RT 1: 5666-10150 bp Neighborhood of RT #1 [5666, 10173] Cas1_I-II-III Cas1_I-II-III RVT-CRISPR SAVED SAVED Feature: gene Location: 5666-6988 bp Feature: domain Description: Cas1_I-II-III Location: 5669-5975 bp Feature: domain Description: Cas1_I-II-III Location: 5669-5975 bp Feature: domain Description: Cas1_I-II-III Location: 6509-6944 bp Feature: domain Description: Cas1_I-II-III Location: 6509-6944 bp Feature: gene Location: 6894-7121 bp Feature: gene Location: 7180-8262 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7501-8095 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7501-8 095 bp Feature: gene Location: 8268-8399 bp Feature: gene Location: 9136-10173 bp Feature: domain Description: SAVED Location: 9457-9736 bp Feature: domain Description: SAVED Location: 9457-9736 bp Feature: domain Description: SAVED Location: 10027-10150 bp Feature: domain Description: SAVED Location: 10027-10150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), RVT-CRISPR, SAVED (pfam18145)

Seq: CAAAFO010000046.1 (10329 bp)
Overview 1 RT 1: 8116-10241 bp Neighborhood of RT #1 [8116, 10327] DUF1883 TIR_2 RVT-GII GIIM Feature: gene Location: 8116-8907 bp Feature: domain Description: DUF1883 Location: 8119-8380 bp Feature: domain Description: DUF1883 Location: 8119 -8380 bp Feature: domain Description: TIR_2 Location: 8494-8788 bp Feature: domain Description: TIR_2 Location: 849 4-8788 bp Feature: gene Location: 8975-9397 bp Feature: gene Location: 9509-10327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9557-9941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 557-9 9 41 bp Feature: domain Description: GIIM Note: maturase Location: 10025-10241 bp Feature: domain Description: GIIM Note: maturase Location: 10025-10241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1883 (pfam08980), TIR_2 (pfam13676), RVT-GII, GIIM (pfam08388)

Seq: CAAAFO010000047.1 (3214 bp)
Overview 1 RT 1: 1-2599 bp Neighborhood of RT #1 [1, 2599] RVT-GII Feature: gene Location: 1-1089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-946 bp Feature: gene Location: 1229-1375 bp Feature: gene Location: 2288-2599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAAFO010000003.1 (2757 bp)
Overview 1 RT 1: 81-2755 bp Neighborhood of RT #1 [81, 2755] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 81-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93-387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93-387 bp Feature: domain Description: Intron_maturas2 Location: 507-723 bp Feature: domain Description: Intron_maturas2 Location: 507-723 bp Feature: domain Description: HNHc Note: nucleases Location: 912-1080 bp Feature: domain Description: HNHc Note: nucleases Location: 912-1080 bp Feature: gene Location: 1595-2353 bp Feature: gene Location: 2366-2755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAAFO010000008.1 (171635 bp)
Overview 1 RT 1: 168616-171148 bp Neighborhood of RT #1 [168616, 171633] HsdM RVT-GII GIIM Feature: gene Location: 168616-169419 bp Feature: domain Description: HsdM Location: 168664-168925 bp Feature: domain Description: HsdM Location: 168664-168925 bp Feature: gene Location: 169717-170145 bp Feature: gene Location: 170587-171633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170590-170863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170590-170863 bp Feature: domain Description: GIIM Note: maturase Location: 170917-171148 bp Feature: domain Description: GIIM Note: maturase Location: 170917-171148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-GII, GIIM (pfam08388)

Seq: CAAAFO010000084.1 (2681 bp)
Overview 1 RT 1: 80-1833 bp Neighborhood of RT #1 [80, 1833] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 80-1549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-794 bp Feature: domain Description: Intron_maturas2 Location: 905-1127 bp Feature: domain Description: Intron_maturas2 Location: 905-1127 bp Feature: domain Description: HNHc Note: nucleases Location: 1304-1481 bp Feature: domain Description: HNHc Note: nucleases Location: 13 04-1481 bp Feature: gene Location: 1243-1656 bp Feature: gene Location: 1696-1833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAAFO010000129.1 (56909 bp)
Overview 1 RT 1: 42780-46387 bp Neighborhood of RT #1 [42780, 46387] RVT-GII Intron_maturas2 Feature: gene Location: 42780-42977 bp Feature: gene Location: 43330-43491 bp Feature: gene Location: 43561-45531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43567-44626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43567-44626 bp Feature: domain Description: Intron_maturas2 Location: 45115-45400 bp Feature: domain Description: Intron_maturas2 Location: 45115-45400 bp Feature: gene Location: 45688-45984 bp Feature: gene Location: 46124-46387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: CAAAFO010000048.1 (3926 bp)
Overview 1 RT 1: 3-2521 bp Neighborhood of RT #1 [3, 2622] RVT-GII YebA Feature: gene Location: 3-1400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1383 bp Feature: gene Location: 970-1239 bp Feature: gene Location: 1741-2622 bp Feature: domain Description: YebA Location: 2056-2521 bp Feature: domain Description: YebA Location: 2056-2521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YebA (COG1305)

Seq: CAAAFO010000009.1 (18363 bp)
Overview 1 RT 1: 1-2798 bp Neighborhood of RT #1 [1, 2798] RVT_N RVT-GII Feature: gene Location: 1-798 bp Feature: domain Description: RVT_N Location: 124-361 bp Feature: domain Description: RVT_N Location: 124-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-799 bp Feature: gene Location: 870-1226 bp Feature: gene Location: 2079-2798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII