myRT

myRT report for GCA_900634745.1_Cv1_Ct_nod1

Download annotations/find similar RTs

Seq: CAAAFR010000185.1 (17710 bp)
Overview 1 RT 1: 11272-15601 bp Neighborhood of RT #1 [11272, 15601] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR ThiF Feature: gene Location: 11272-11625 bp Feature: domain Description: Cas2_I_II_III Location: 11341-11545 bp Feature: domain Description: Cas2_I_II_III Location: 1 1 341 -1 1 545 bp Feature: gene Location: 11858-12877 bp Feature: domain Description: Cas1_I-II-III Location: 11882-12818 bp Feature: domain Description: Cas1 _I-II-III Location: 1 1 882-1 281 8 bp Feature: gene Location: 12868-13944 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13093-13690 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 3093-1 3690 bp Feature: gene Location: 13987-15018 bp Feature: domain Description: ThiF Location: 14023-14794 bp Feature: domain Description: ThiF Location: 1 4023-1 4794 bp Feature: gene Location: 15077-15601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, ThiF (pfam00899)

Seq: CAAAFR010000138.1 (2927 bp)
Overview 1 RT 1: 658-2766 bp Neighborhood of RT #1 [658, 2924] DDE_Tnp_4 RVT-GII GIIM Feature: gene Location: 658-1287 bp Feature: gene Location: 1631-2281 bp Feature: domain Description: DDE_Tnp_4 Location: 1904-2240 bp Feature: domain Description: DDE_Tnp_4 Location: 1904-2 2 40 bp Feature: gene Location: 2355-2924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2400-2493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 400-2 493 bp Feature: domain Description: GIIM Note: maturase Location: 2565-2766 bp Feature: domain Description: GIIM Note: maturase Location: 2 565-2 766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_4 (pfam13359), RVT-GII, GIIM (pfam08388)

Seq: CAAAFR010000063.1 (32748 bp)
Overview 1 RT 1: 21292-25493 bp Neighborhood of RT #1 [21292, 25493] PGDH PGDH HTH_MerR-like_sg3 RVT-GII GIIM Phage_int_SAM_4 INT_RitA_C_like Feature: gene Location: 21292-22476 bp Feature: domain Description: PGDH Location: 21406-22144 bp Feature: domain Description: PGDH Location: 21406-22144 bp Feature: domain Description: PGDH Location: 22231-22462 bp Feature: domain Description: PGDH Location: 2223 1-22462 bp Feature: gene Location: 22689-23048 bp Feature: domain Description: HTH_MerR-like_sg3 Location: 22692-23034 bp Feature: domain Description: HTH_MerR-like_sg3 Location: 22692-23 03 4 bp Feature: gene Location: 23201-23953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23282-23567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 282-23 567 bp Feature: domain Description: GIIM Note: maturase Location: 23648-23864 bp Feature: domain Description: GIIM Note: maturase Location: 23 648-23 864 bp Feature: gene Location: 23986-25254 bp Feature: domain Description: Phage_int_SAM_4 Location: 24358-24592 bp Feature: domain Description: Phage_int_SAM_4 Location: 243 58-24592 bp Feature: domain Description: INT_RitA_C_like Location: 24679-25216 bp Feature: domain Description: INT_RitA_C_like Location: 24679-25216 bp Feature: gene Location: 25251-25493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGDH (TIGR01327), HTH_MerR-like_sg3 (cd01282), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188)

Seq: CAAAFR010000113.1 (5795 bp)
Overview 1 RT 1: 1137-5781 bp Neighborhood of RT #1 [1137, 5792] INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM MarR MFS_MMR_MDR_like MFS_MMR_MDR_like Feature: gene Location: 1137-2120 bp Feature: domain Description: INT_RitB_C_like Location: 1470-2052 bp Feature: domain Description: INT_RitB_C_like Location: 14 70-2052 bp Feature: gene Location: 2117-3349 bp Feature: domain Description: Phage_int_SAM_1 Location: 2456-2684 bp Feature: domain Description: Phage_int_SAM_1 Location: 24 56-2684 bp Feature: domain Description: INT_RitA_C_like Location: 2774-3311 bp Feature: domain Description: INT_RitA_C_like Location: 2774 -3311 bp Feature: gene Location: 3519-4220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3522-3807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3522-3807 bp Feature: domain Description: GIIM Note: maturase Location: 3879-4110 bp Feature: domain Description: GIIM Note: maturase Location: 3879-4 110 bp Feature: gene Location: 4423-4887 bp Feature: domain Description: MarR Location: 4561-4876 bp Feature: domain Description: MarR Location: 4 561-4 876 bp Feature: gene Location: 5001-5792 bp Feature: domain Description: MFS_MMR_MDR_like Location: 5058-5139 bp Feature: domain Description: MFS_MMR_MDR_like Location: 5058-5139 bp Feature: domain Description: MFS_MMR_MDR_like Location: 5322-5781 bp Feature: domain Description: MFS_MMR_MDR_like Location: 5322-5781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), MarR (pfam01047), MFS_MMR_MDR_like (cd17504)