myRT

myRT report for GCA_900634785.1_Cm1_Dg_nod

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Seq: CAAAFU010000323.1 (24756 bp)
Overview 1 RT 1: 3-2879 bp 2 RT 2: 8182-11494 bp Neighborhood of RT #1 [3, 2935] RVT-GII IS285 TIR_2 WD40 WD40 Neighborhood of RT #2 [8182, 11541] PIN_Pae0151-like Zn_ribbon_recom RVT-GII KOG4768 Rve Feature: gene Location: 3-704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 9-705 bp Feature: gene Location: 1257-1889 bp Feature: domain Description: IS285 Location: 1374-1887 bp Feature: domain Description: IS285 Location: 1 374-1 887 bp Feature: gene Location: 1988-2935 bp Feature: domain Description: TIR_2 Location: 2066-2426 bp Feature: domain Description: TIR_2 Location: 2066-2426 bp Feature: domain Description: WD40 Location: 2669-2744 bp Feature: domain Description: WD40 Location: 2669-2744 bp Feature: domain Description: WD40 Location: 2780-2879 bp Feature: domain Description: WD40 Location: 2780-2879 bp Feature: gene Location: 8182-8472 bp Feature: gene Location: 8469-8864 bp Feature: domain Description: PIN_Pae0151-like Location: 8478-8832 bp Feature: domain Description: PIN_Pae01 51 -like Location: 8478-8832 bp Feature: gene Location: 9375-10439 bp Feature: domain Description: Zn_ribbon_recom Location: 9516-9669 bp Feature: domain Description: Zn_ribbon_recom Location: 951 6-9669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10104-10164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 04-1 01 64 bp Feature: gene Location: 10590-11225 bp Feature: domain Description: KOG4768 Location: 10620-11202 bp Feature: domain Description: KOG4768 Location: 1 0620-1 1 202 bp Feature: gene Location: 11356-11541 bp Feature: domain Description: Rve Location: 11362-11494 bp Feature: domain Description: Rve Location: 1 1 362-1 1 494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS285 (COG3328), TIR_2 (pfam13676), WD40 (smart00320), PIN_Pae0151-like (cd09873), Zn_ribbon_recom (pfam13408), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Rve (COG3316)

Seq: CAAAFU010000086.1 (26643 bp)
Overview 1 RT 1: 6475-9511 bp Neighborhood of RT #1 [6475, 9549] Cas6 Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 6475-7236 bp Feature: domain Description: Cas6 Location: 6817-7228 bp Feature: domain Description: Cas6 Location: 6817-72 2 8 bp Feature: gene Location: 7374-7655 bp Feature: domain Description: Cas2_I_II_III Location: 7383-7617 bp Feature: domain Description: Cas2 _I_II_III Location: 7383-7617 bp Feature: gene Location: 7678-9549 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7885-8494 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7885-8494 bp Feature: domain Description: Cas1_I-II-III Location: 8563-9511 bp Feature: domain Description: Cas1_I-II-III Location: 8563-9511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6 (pfam09559), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: CAAAFU010000152.1 (16554 bp)
Overview 1 RT 1: 7-4407 bp Neighborhood of RT #1 [7, 4407] RVT-GII GIIM Methyltransf_23 Feature: gene Location: 7-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223-883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 -883 bp Feature: domain Description: GIIM Note: maturase Location: 982-1198 bp Feature: domain Description: GIIM Note: maturase Location: 982-1198 bp Feature: gene Location: 2321-3127 bp Feature: domain Description: Methyltransf_23 Location: 2420-2882 bp Feature: domain Description: Methyltransf_23 Location: 2420-2882 bp Feature: gene Location: 3955-4407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Methyltransf_23 (pfam13489)