myRT

myRT report for GCA_900635375.1_Cj1_Dg_nod

Download annotations/find similar RTs

Seq: CAAAGY010000128.1 (7123 bp)
Overview 1 RT 1: 2394-7081 bp Neighborhood of RT #1 [2394, 7122] InsE RVT-GII GIIM RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2394-2771 bp Feature: domain Description: InsE Location: 2409-2712 bp Feature: domain Description: InsE Location: 2409-271 2 bp Feature: gene Location: 2880-3905 bp Feature: gene Location: 3336-4772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657-4347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657-4347 bp Feature: domain Description: GIIM Note: maturase Location: 4416-4650 bp Feature: domain Description: GIIM Note: maturase Location: 441 6-4650 bp Feature: gene Location: 5206-5502 bp Feature: gene Location: 6049-7122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6193-6388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 93-6388 bp Feature: domain Description: Intron_maturas2 Location: 6505-6724 bp Feature: domain Description: Intron_maturas2 Location: 6505-6724 bp Feature: domain Description: HNHc Note: nucleases Location: 6898-7081 bp Feature: domain Description: HNHc Note: nucleases Location: 6898-7081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAAGY010000129.1 (16544 bp)
Overview 1 RT 1: 7-4407 bp Neighborhood of RT #1 [7, 4407] RVT-GII GIIM Methyltransf_23 Feature: gene Location: 7-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223-883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 3-883 bp Feature: domain Description: GIIM Note: maturase Location: 982-1198 bp Feature: domain Description: GIIM Note: maturase Location: 982 -1198 bp Feature: gene Location: 2321-3127 bp Feature: domain Description: Methyltransf_23 Location: 2420-2882 bp Feature: domain Description: Methyltransf_2 3 Location: 2 42 0-2 882 bp Feature: gene Location: 3955-4407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Methyltransf_23 (pfam13489)

Seq: CAAAGY010000067.1 (22771 bp)
Overview 1 RT 1: 6614-13112 bp Neighborhood of RT #1 [6614, 13456] Cas6 Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cas10_III cas_TM1794_Cmr2 Cas10_III Feature: gene Location: 6614-7375 bp Feature: domain Description: Cas6 Location: 6956-7367 bp Feature: domain Description: Cas6 Location: 6956-73 67 bp Feature: gene Location: 7513-7794 bp Feature: domain Description: Cas2_I_II_III Location: 7522-7756 bp Feature: domain Description: Cas2_I_II_III Location: 7522-7756 bp Feature: gene Location: 7817-9688 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8024-8633 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8024-863 3 bp Feature: domain Description: Cas1_I-II-III Location: 8702-9650 bp Feature: domain Description: Cas1_I-II-III Location: 8702-9650 bp Feature: gene Location: 11170-11526 bp Feature: gene Location: 11519-13456 bp Feature: domain Description: Cas10_III Location: 11534-11675 bp Feature: domain Description: Cas10_III Location: 1153 4-11675 bp Feature: domain Description: cas_TM1794_Cmr2 Location: 11978-12155 bp Feature: domain Description: cas_TM1794_Cmr2 Location: 11978-12155 bp Feature: domain Description: Cas10_III Location: 12653-13112 bp Feature: domain Description: Cas10_III Location: 12653 -13 112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6 (pfam09559), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas10_III (cl21742), cas_TM1794_Cmr2 (TIGR02577)

Seq: CAAAGY010000011.1 (3267 bp)
Overview 1 RT 1: 55-3034 bp Neighborhood of RT #1 [55, 3036] RVT-GII Intron_maturas2 COG3464 Feature: gene Location: 55-3036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-1111 bp Feature: domain Description: Intron_maturas2 Location: 1228-1429 bp Feature: domain Description: Intron_maturas2 Location: 1228-14 29 bp Feature: domain Description: COG3464 Location: 2803-3034 bp Feature: domain Description: COG34 64 Location: 2803-3034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), COG3464 (Transposase )

Seq: CAAAGY010000264.1 (27209 bp)
Overview 1 RT 1: 10352-13664 bp Neighborhood of RT #1 [10352, 13711] PIN_Pae0151-like Zn_ribbon_recom RVT-GII KOG4768 Rve Feature: gene Location: 10352-10642 bp Feature: gene Location: 10639-11034 bp Feature: domain Description: PIN_Pae0151-like Location: 10648-11002 bp Feature: domain Description: PIN_Pae015 1-like Location: 10648-11002 bp Feature: gene Location: 11545-12609 bp Feature: domain Description: Zn_ribbon_recom Location: 11686-11839 bp Feature: domain Description: Zn_ribbon_recom Location: 11686-11839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12274-12334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12274-12334 bp Feature: gene Location: 12760-13395 bp Feature: domain Description: KOG4768 Location: 12790-13372 bp Feature: domain Description: KOG4768 Location: 12790-13372 bp Feature: gene Location: 13526-13711 bp Feature: domain Description: Rve Location: 13532-13664 bp Feature: domain Description: Rve Location: 135 32-13664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_Pae0151-like (cd09873), Zn_ribbon_recom (pfam13408), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Rve (COG3316)

Seq: CAAAGY010000153.1 (11268 bp)
Overview 1 RT 1: 9379-11249 bp Neighborhood of RT #1 [9379, 11266] RVT-GII Feature: gene Location: 9379-9771 bp Feature: gene Location: 10166-10522 bp Feature: gene Location: 10610-11266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10811-11249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10811-11249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII