myRT

myRT report for GCA_900639475.1_E7207_hybrid_assembly

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Seq: CAAAHI010000001.1 (1849767 bp)
Overview 1 RT 1: 232-5286 bp 2 RT 2: 906340-911654 bp Neighborhood of RT #1 [232, 5286] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #2 [906340, 911665] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 232-735 bp Feature: domain Description: ArdA Location: 250-721 bp Feature: domain Description: ArdA Location: 250-721 bp Feature: gene Location: 737-946 bp Feature: gene Location: 1076-2986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1409-2147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 409-21 47 bp Feature: domain Description: HNHc Note: nucleases Location: 2702-2867 bp Feature: domain Description: HNHc Note: nucleases Location: 2702-2867 bp Feature: gene Location: 3866-5050 bp Feature: domain Description: HTH_XRE Location: 3896-4040 bp Feature: domain Description: HTH_XRE Location: 3896-4040 bp Feature: domain Description: Rol_Rep_N Location: 4073-4337 bp Feature: domain Description: Rol_Rep_N Location: 4073-4337 bp Feature: domain Description: Rep_trans Location: 4361-4973 bp Feature: domain Description: Rep_trans Location: 4361 -4973 bp Feature: gene Location: 5143-5286 bp Feature: gene Location: 906340-906594 bp Feature: gene Location: 906850-908034 bp Feature: domain Description: HTH_XRE Location: 906880-907024 bp Feature: domain Description: HTH_XRE Location: 906880-907024 bp Feature: domain Description: Rol_Rep_N Location: 907057-907321 bp Feature: domain Description: Rol_Rep_N Location: 907057-907321 bp Feature: domain Description: Rep_trans Location: 907345-907957 bp Feature: domain Description: Rep_trans Location: 907345-907957 bp Feature: gene Location: 908914-910824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909247-909985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909247-909985 bp Feature: domain Description: HNHc Note: nucleases Location: 910540-910705 bp Feature: domain Description: HNHc Note: nucleases Location: 91 0540-91 0705 bp Feature: gene Location: 911012-911152 bp Feature: gene Location: 911165-911665 bp Feature: domain Description: ArdA Location: 911183-911654 bp Feature: domain Description: ArdA Location: 91 1 1 83-91 1 654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: CAAAHI010000005.1 (53302 bp)
Overview 1 RT 1: 33893-39746 bp Neighborhood of RT #1 [33893, 39865] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 33893-35587 bp Feature: domain Description: VirB4 Location: 34211-34895 bp Feature: domain Description: VirB4 Location: 342 11-34895 bp Feature: gene Location: 35855-36088 bp Feature: gene Location: 36275-38152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36590-37328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36590-3732 8 bp Feature: domain Description: HNHc Note: nucleases Location: 37886-38039 bp Feature: domain Description: HNHc Note: nucleases Location: 37886-38039 bp Feature: gene Location: 38340-38660 bp Feature: gene Location: 38660-39865 bp Feature: domain Description: Glucosaminidase Location: 38936-39332 bp Feature: domain Description: Glucosaminidase Location: 38936-39332 bp Feature: domain Description: Peptidase_M23 Location: 39509-39746 bp Feature: domain Description: Peptidase_M2 3 Location: 39509-39746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: CAAAHI010000006.1 (48243 bp)
Overview 1 RT 1: 29864-34540 bp Neighborhood of RT #1 [29864, 34540] Rve HsdM RVT-AbiP2 Tra8 Feature: gene Location: 29864-30058 bp Feature: domain Description: Rve Location: 29870-30014 bp Feature: domain Description: Rve Location: 29870-3 0014 bp Feature: gene Location: 30074-31552 bp Feature: domain Description: HsdM Location: 30095-31520 bp Feature: domain Description: HsdM Location: 3 0095-3 1520 bp Feature: gene Location: 31890-33365 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 32238-32703 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 223 8-3 2703 bp Feature: gene Location: 33343-34296 bp Feature: domain Description: Tra8 Location: 33346-34273 bp Feature: domain Description: Tra8 Location: 3 3 3 46-3 4273 bp Feature: gene Location: 34379-34540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)