myRT

myRT report for GCA_900639905.1_Leg_maceachernii_Gorman_PX-1-G2-E2.v1

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Seq: CAAAIB010000008.1 (159030 bp)
Overview 1 RT 1: 33391-37620 bp 2 RT 2: 48713-55375 bp Neighborhood of RT #1 [33391, 37658] DDE_Tnp_1 RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #2 [48713, 55437] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII KOG0713 AHH Feature: gene Location: 33391-34323 bp Feature: domain Description: DDE_Tnp_1 Location: 33658-34162 bp Feature: domain Description: DDE_Tnp_1 Location: 33658-341 62 bp Feature: gene Location: 34365-34559 bp Feature: gene Location: 34682-35989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34967-35606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34967-35606 bp Feature: domain Description: GIIM Note: maturase Location: 35678-35906 bp Feature: domain Description: GIIM Note: maturase Location: 35678-35906 bp Feature: gene Location: 36421-37167 bp Feature: domain Description: COG3436 Location: 36658-37123 bp Feature: domain Description: COG3436 Location: 36658-371 23 bp Feature: gene Location: 37305-37658 bp Feature: domain Description: TnpB_IS66 Location: 37332-37620 bp Feature: domain Description: TnpB_IS66 Location: 37332-37620 bp Feature: gene Location: 48713-49108 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 48917-49028 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4891 7-49028 bp Feature: gene Location: 49507-49794 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 49636-49792 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 49636-49792 bp Feature: gene Location: 49879-50061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49885-50044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49885-50044 bp Feature: gene Location: 50210-51688 bp Feature: gene Location: 51703-55437 bp Feature: domain Description: KOG0713 Location: 51706-51937 bp Feature: domain Description: KOG071 3 Location: 51 706-51 937 bp Feature: domain Description: AHH Location: 55063-55375 bp Feature: domain Description: AHH Location: 55063-55375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416), KOG0713 (KOG0713, Molecular chaperone (DnaJ superfamily) ), AHH (pfam14412)

Seq: CAAAIB010000012.1 (124648 bp)
Overview 1 RT 1: 1-4945 bp Neighborhood of RT #1 [1, 4945] DUF1566 Avd_like RVT-DGRs DUF772 Feature: gene Location: 1-1227 bp Feature: domain Description: DUF1566 Location: 997-1213 bp Feature: domain Description: DUF1566 Location: 997-12 13 bp Feature: gene Location: 1306-1659 bp Feature: domain Description: Avd_like Location: 1333-1639 bp Feature: domain Description: Avd_like Location: 1333-1639 bp Feature: gene Location: 1991-3190 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2210-2909 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 2 10-2 909 bp Feature: gene Location: 3209-4669 bp Feature: domain Description: DUF772 Location: 3392-3584 bp Feature: domain Description: DUF772 Location: 3392 -3584 bp Feature: gene Location: 4814-4945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, DUF772 (pfam05598)