myRT

myRT report for GCA_900639975.1_Leg_santicrucis_SC-63-C7.v1

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Seq: CAAAIH010000148.1 (491 bp)
Overview 1 RT 1: 1-452 bp Neighborhood of RT #1 [1, 452] RVT-UG18 Feature: gene Location: 1-249 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 4-139 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 4-1 39 bp Feature: gene Location: 282-452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18

Seq: CAAAIH010000028.1 (59149 bp)
Overview 1 RT 1: 11821-18257 bp Neighborhood of RT #1 [11821, 18268] MFS_MdfA_MDR_like RVT-UG18 SidC_N Kup Feature: gene Location: 11821-13671 bp Feature: gene Location: 13860-15095 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 13899-15009 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 13899-15009 bp Feature: gene Location: 15180-15392 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 15186-15312 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 15186-15312 bp Feature: gene Location: 15402-16286 bp Feature: domain Description: SidC_N Location: 15570-16218 bp Feature: domain Description: SidC_N Location: 15570-162 18 bp Feature: gene Location: 16388-18268 bp Feature: domain Description: Kup Location: 16403-18257 bp Feature: domain Description: Kup Location: 16403-182 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MdfA_MDR_like (cd17320), RVT-UG18, SidC_N (pfam18219), Kup (COG3158)

Seq: CAAAIH010000014.1 (103395 bp)
Overview 1 RT 1: 30415-36376 bp Neighborhood of RT #1 [30415, 36387] YbjQ_1 YbjQ_1 YbjQ_1 DDE_Tnp_1_3 RVT-UG18 SidC_N SidC_N Feature: gene Location: 30415-31650 bp Feature: domain Description: YbjQ_1 Location: 30490-30673 bp Feature: domain Description: YbjQ_1 Location: 3 0490-3 0673 bp Feature: domain Description: YbjQ_1 Location: 30835-31066 bp Feature: domain Description: YbjQ_1 Location: 3 083 5-3 1066 bp Feature: domain Description: YbjQ_1 Location: 31177-31423 bp Feature: domain Description: YbjQ_1 Location: 3 1177-3 1423 bp Feature: gene Location: 31752-32645 bp Feature: domain Description: DDE_Tnp_1_3 Location: 32079-32520 bp Feature: domain Description: DDE_Tnp_1_3 Location: 3 2079-3 2520 bp Feature: gene Location: 32802-33725 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 33027-33609 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 3 3 027-3 3 609 bp Feature: gene Location: 33992-35479 bp Feature: domain Description: SidC_N Location: 33998-34472 bp Feature: domain Description: SidC_N Location: 3 3 998-3 4472 bp Feature: gene Location: 35605-36387 bp Feature: domain Description: SidC_N Location: 35614-36376 bp Feature: domain Description: SidC_N Location: 3 5614-3 63 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjQ_1 (pfam01906), DDE_Tnp_1_3 (pfam13612), RVT-UG18, SidC_N (pfam18219)

Seq: CAAAIH010000039.1 (41180 bp)
Overview 1 RT 1: 12771-18611 bp Neighborhood of RT #1 [12771, 18664] MFS_DtpA_like RVT-UG5 DUF927 Feature: gene Location: 12771-14303 bp Feature: domain Description: MFS_DtpA_like Location: 12852-14247 bp Feature: domain Description: MFS_DtpA_like Location: 12852-14 24 7 bp Feature: gene Location: 14465-14707 bp Feature: gene Location: 14944-18105 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 15502-16012 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 15502-16012 bp Feature: gene Location: 18164-18493 bp Feature: gene Location: 18497-18664 bp Feature: domain Description: DUF927 Location: 18503-18611 bp Feature: domain Description: DUF927 Location: 18503-18611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_DtpA_like (cd17346), RVT-UG5, DUF927 (pfam06048)

Seq: CAAAIH010000106.1 (1764 bp)
Overview 1 RT 1: 2-1762 bp Neighborhood of RT #1 [2, 1762] RVT-UG18 Feature: gene Location: 2-802 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 224-803 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 224-803 bp Feature: gene Location: 944-1762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18

Seq: CAAAIH010000104.1 (2059 bp)
Overview 1 RT 1: 3-2030 bp Neighborhood of RT #1 [3, 2056] RVT-UG18 RVT_N RVT-GII GIIM Feature: gene Location: 3-281 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 6-153 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 6 -153 bp Feature: gene Location: 205-462 bp Feature: gene Location: 671-2056 bp Feature: domain Description: RVT_N Location: 815-1058 bp Feature: domain Description: RVT_N Location: 815-1058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103-1742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103-1742 bp Feature: domain Description: GIIM Note: maturase Location: 1802-2030 bp Feature: domain Description: GIIM Note: maturase Location: 1802-2030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAAAIH010000065.1 (15023 bp)
Overview 1 RT 1: 5648-9121 bp Neighborhood of RT #1 [5648, 10062] RVT-UG18 RVT-UG18 SidC_N Feature: gene Location: 5648-6295 bp Feature: gene Location: 6396-6545 bp Feature: gene Location: 6593-7177 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 6815-7154 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 6815-7 154 bp Feature: gene Location: 7188-7424 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 7191-7287 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 7 191-7 287 bp Feature: gene Location: 7599-7766 bp Feature: gene Location: 7774-10062 bp Feature: domain Description: SidC_N Location: 7786-9121 bp Feature: domain Description: SidC_N Location: 7 7 86-9121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18, SidC_N (pfam18219)

Seq: CAAAIH010000053.1 (25649 bp)
Overview 1 RT 1: 9228-15475 bp Neighborhood of RT #1 [9228, 15495] Integrase_1 RVT-Retrons COG3177 Feature: gene Location: 9228-10037 bp Feature: domain Description: Integrase_1 Location: 9555-9924 bp Feature: domain Description: Integrase_1 Location: 9555-9924 bp Feature: gene Location: 10071-10319 bp Feature: gene Location: 10825-12576 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10960-11626 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10960-11626 bp Feature: gene Location: 12840-14096 bp Feature: gene Location: 14386-15495 bp Feature: domain Description: COG3177 Location: 14392-15475 bp Feature: domain Description: COG3177 Location: 14392-15475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), RVT-Retrons, COG3177 (Fic family protein )

Seq: CAAAIH010000008.1 (126042 bp)
Overview 1 RT 1: 1833-5156 bp Neighborhood of RT #1 [1833, 5156] PhnB_like YbaA RVT-GII GIIM Feature: gene Location: 1833-2258 bp Feature: domain Description: PhnB_like Location: 1845-2232 bp Feature: domain Description: PhnB_like Location: 1845-2232 bp Feature: gene Location: 2273-2638 bp Feature: domain Description: YbaA Location: 2288-2633 bp Feature: domain Description: YbaA Location: 2288-2633 bp Feature: gene Location: 2800-3432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2869-3043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2869 -3043 bp Feature: domain Description: GIIM Note: maturase Location: 3124-3343 bp Feature: domain Description: GIIM Note: maturase Location: 3124-3343 bp Feature: gene Location: 3782-4426 bp Feature: gene Location: 4779-5156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhnB_like (cd06588), YbaA (COG5507), RVT-GII, GIIM (pfam08388)

Seq: CAAAIH010000108.1 (1692 bp)
Overview 1 RT 1: 2-1361 bp Neighborhood of RT #1 [2, 1633] RVT_N RVT-GII GIIM Feature: gene Location: 2-1633 bp Feature: domain Description: RVT_N Location: 146-389 bp Feature: domain Description: RVT_N Location: 146-389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434-10 73 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1361 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)