myRT

myRT report for GCA_900640185.1_Leg_sainthelensi_MSH-4.v1

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Seq: CAAAJE010000001.1 (261528 bp)
Overview 1 RT 1: 249070-254353 bp Neighborhood of RT #1 [249070, 255186] Trypsin_2 RVT-AbiP2 DUF5338 DUF927 Feature: gene Location: 249070-249834 bp Feature: gene Location: 249898-250770 bp Feature: domain Description: Trypsin_2 Location: 249991-250510 bp Feature: domain Description: Trypsin_2 Location: 249991 -25051 0 bp Feature: gene Location: 250870-252405 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 251320-251794 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 251 320-251 794 bp Feature: gene Location: 252705-253091 bp Feature: domain Description: DUF5338 Location: 252744-252942 bp Feature: domain Description: DUF5338 Location: 252744-252942 bp Feature: gene Location: 253405-255186 bp Feature: domain Description: DUF927 Location: 253516-254353 bp Feature: domain Description: DUF927 Location: 25351 6-254353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), RVT-AbiP2, DUF5338 (pfam17273), DUF927 (pfam06048)

Seq: CAAAJE010000007.1 (176613 bp)
Overview 1 RT 1: 169055-175982 bp Neighborhood of RT #1 [169055, 176026] CAP_ED CPBP RVT-UNC GGDEF EAL Feature: gene Location: 169055-171121 bp Feature: gene Location: 171134-172246 bp Feature: domain Description: CAP_ED Location: 171173-171473 bp Feature: domain Description: CAP_ED Location: 171173-171473 bp Feature: domain Description: CPBP Location: 171950-172199 bp Feature: domain Description: CPBP Location: 171950-172 199 bp Feature: gene Location: 172221-173693 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 172545-173181 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 172 545-173181 bp Feature: gene Location: 173945-174355 bp Feature: gene Location: 174380-176026 bp Feature: domain Description: GGDEF Location: 174725-175205 bp Feature: domain Description: GGDEF Location: 17472 5-1752 05 bp Feature: domain Description: EAL Location: 175280-175982 bp Feature: domain Description: EAL Location: 1752 80-175982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CAP_ED (cl00047), CPBP, RVT-UG27/RVT-DGRs/RVT-CRISPR(RVT-UNC), GGDEF (TIGR00254), EAL (smart00052)

Seq: CAAAJE010000017.1 (97798 bp)
Overview 1 RT 1: 34663-40265 bp Neighborhood of RT #1 [34663, 40265] RVT_N RVT-GII Feature: gene Location: 34663-36099 bp Feature: gene Location: 36326-36628 bp Feature: gene Location: 36745-37815 bp Feature: domain Description: RVT_N Location: 36802-37045 bp Feature: domain Description: RVT_N Location: 3 6802-3 7045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37090-37696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7090-3 7696 bp Feature: gene Location: 38449-39834 bp Feature: gene Location: 40038-40265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII