myRT

myRT report for GCA_900659865.1_H1P

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Seq: LR213983.1 (12079 bp)
Overview 1 RT 1: 438-5966 bp Neighborhood of RT #1 [438, 5966] Avd_like RVT-DGRs AcrB Feature: gene Location: 438-794 bp Feature: domain Description: Avd_like Location: 456-762 bp Feature: domain Description: Avd_like Location: 456-762 bp Feature: gene Location: 815-1873 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1025-1664 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 025-1 664 bp Feature: gene Location: 2209-5358 bp Feature: domain Description: AcrB Location: 2215-5290 bp Feature: domain Description: AcrB Location: 221 5-5290 bp Feature: gene Location: 5670-5966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, AcrB (COG0841)

Seq: LR213956.1 (13571 bp)
Overview 1 RT 1: 9949-13227 bp Neighborhood of RT #1 [9949, 13445] ABC_perm_GldF GldG GldG RVT-GII Feature: gene Location: 9949-10740 bp Feature: domain Description: ABC_perm_GldF Location: 9967-10714 bp Feature: domain Description: ABC_perm_GldF Location: 9967-10714 bp Feature: gene Location: 11200-12696 bp Feature: domain Description: GldG Location: 11209-12427 bp Feature: domain Description: GldG Location: 112 09-12 42 7 bp Feature: domain Description: GldG Location: 12433-12694 bp Feature: domain Description: GldG Location: 12 433-12 694 bp Feature: gene Location: 12942-13445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12972-13227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 972 -132 2 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_perm_GldF (TIGR03518), GldG (TIGR03521), RVT-GII

Seq: LR214354.1 (1043 bp)
Overview 1 RT 1: 110-941 bp Neighborhood of RT #1 [110, 1042] RVT-GII GIIM McrA Feature: gene Location: 110-1042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113-233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 -23 3 bp Feature: domain Description: GIIM Note: maturase Location: 341-569 bp Feature: domain Description: GIIM Note: maturase Location: 3 41-569 bp Feature: domain Description: McrA Location: 668-941 bp Feature: domain Description: McrA Location: 668-941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LR213863.1 (23326 bp)
Overview 1 RT 1: 3242-8873 bp Neighborhood of RT #1 [3242, 8884] ZnMc_serralysin_like HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind RVT-GII KOG0266 MoxR Feature: gene Location: 3242-3454 bp Feature: gene Location: 3795-6161 bp Feature: domain Description: ZnMc_serralysin_like Location: 3921-4494 bp Feature: domain Description: ZnMc_serralysin_like Location: 3921-4 4 94 bp Feature: domain Description: HemolysinCabind Location: 4728-4809 bp Feature: domain Description: HemolysinCabind Location: 4 728-4 809 bp Feature: domain Description: HemolysinCabind Location: 4893-4971 bp Feature: domain Description: HemolysinCabind Location: 4 893-4 971 bp Feature: domain Description: HemolysinCabind Location: 5073-5160 bp Feature: domain Description: HemolysinCabind Location: 5073-5160 bp Feature: domain Description: HemolysinCabind Location: 5229-5307 bp Feature: domain Description: HemolysinCabind Location: 5229-5307 bp Feature: domain Description: HemolysinCabind Location: 5430-5532 bp Feature: domain Description: HemolysinCabind Location: 54 30-5532 bp Feature: domain Description: HemolysinCabind Location: 5565-5643 bp Feature: domain Description: HemolysinCabind Location: 5565-564 3 bp Feature: domain Description: HemolysinCabind Location: 5745-5823 bp Feature: domain Description: HemolysinCabind Location: 574 5-5823 bp Feature: gene Location: 7014-7301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7029-7209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7029-7209 bp Feature: gene Location: 7529-7870 bp Feature: domain Description: KOG0266 Location: 7535-7769 bp Feature: domain Description: KOG0266 Location: 7535-7769 bp Feature: gene Location: 7931-8884 bp Feature: domain Description: MoxR Location: 7943-8873 bp Feature: domain Description: MoxR Location: 794 3-8873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZnMc_serralysin_like (cd04277), HemolysinCabind (pfam00353), RVT-GII, KOG0266 (KOG0266, WD40 repeat-containing protein ), MoxR (COG0714)

Seq: LR214353.1 (1044 bp)
Overview 1 RT 1: 3-486 bp Neighborhood of RT #1 [3, 485] RVT_N RVT-GII Feature: gene Location: 3-485 bp Feature: domain Description: RVT_N Location: 60-306 bp Feature: domain Description: RVT_N Location: 60-306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357-486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 7-486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LR214010.1 (10883 bp)
Overview 1 RT 1: 7460-10877 bp Neighborhood of RT #1 [7460, 10882] gag_pre-integrs gag_pre-integrs gag_pre-integrs RVT-GII HTH_29 HTH_33 DDE_3 RVT-GII Feature: gene Location: 7460-7639 bp Feature: gene Location: 8446-8754 bp Feature: domain Description: gag_pre-integrs Location: 8470-8497 bp Feature: domain Description: gag_pre-integrs Location: 8470-8497 bp Feature: domain Description: gag_pre-integrs Location: 8548-8602 bp Feature: domain Description: gag_pre-integrs Location: 8548-86 02 bp Feature: domain Description: gag_pre-integrs Location: 8617-8644 bp Feature: domain Description: gag_pre-integrs Location: 86 17-86 44 bp Feature: gene Location: 8886-9320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9036-9291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9036 -9291 bp Feature: gene Location: 9233-9937 bp Feature: domain Description: HTH_29 Location: 9326-9488 bp Feature: domain Description: HTH_29 Location: 9326 -9488 bp Feature: domain Description: HTH_33 Location: 9560-9737 bp Feature: domain Description: HTH_33 Location: 956 0-9737 bp Feature: gene Location: 9978-10304 bp Feature: domain Description: DDE_3 Location: 10026-10212 bp Feature: domain Description: DDE_3 Location: 10026 -10212 bp Feature: gene Location: 10331-10882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10559-10877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10559-10877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gag_pre-integrs (pfam13976), RVT-GII, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: LR214033.1 (9767 bp)
Overview 1 RT 1: 5906-9283 bp Neighborhood of RT #1 [5906, 9375] RVT_N RVT-GII GIIM Feature: gene Location: 5906-6316 bp Feature: gene Location: 6421-7584 bp Feature: gene Location: 7987-9375 bp Feature: domain Description: RVT_N Location: 8020-8266 bp Feature: domain Description: RVT_N Location: 8020-8266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8308-9004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8308-9004 bp Feature: domain Description: GIIM Note: maturase Location: 9085-9283 bp Feature: domain Description: GIIM Note: maturase Location: 9085-9283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LR214391.1 (4441 bp)
Overview 1 RT 1: 1-4070 bp Neighborhood of RT #1 [1, 4081] TPR COG4995 RVT_N RVT-GII GIIM HNH Feature: gene Location: 1-1539 bp Feature: domain Description: TPR Location: 100-184 bp Feature: domain Description: TPR Location: 100-18 4 bp Feature: domain Description: COG4995 Location: 319-1534 bp Feature: domain Description: COG4995 Location: 319-1534 bp Feature: gene Location: 2342-4081 bp Feature: domain Description: RVT_N Location: 2378-2624 bp Feature: domain Description: RVT_N Location: 2378 -2624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2666-3380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2666-338 0 bp Feature: domain Description: GIIM Note: maturase Location: 3485-3713 bp Feature: domain Description: GIIM Note: maturase Location: 348 5-3713 bp Feature: domain Description: HNH Note: nucleases Location: 3938-4070 bp Feature: domain Description: HNH Note: nucleases Location: 3938 -4070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), COG4995 (Uncharacterized conserved protein, contains CHAT domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: LR213916.1 (17444 bp)
Overview 1 RT 1: 12429-17334 bp Neighborhood of RT #1 [12429, 17342] feoB FeoA FeoA RVT-GII GIIM McrA Feature: gene Location: 12429-14786 bp Feature: domain Description: feoB Location: 12432-14760 bp Feature: domain Description: feoB Location: 12432-14760 bp Feature: gene Location: 14949-15566 bp Feature: domain Description: FeoA Location: 15063-15270 bp Feature: domain Description: FeoA Location: 15063-15270 bp Feature: domain Description: FeoA Location: 15333-15561 bp Feature: domain Description: FeoA Location: 15333-15561 bp Feature: gene Location: 16194-17342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16224-16752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16224-16752 bp Feature: domain Description: GIIM Note: maturase Location: 16812-16995 bp Feature: domain Description: GIIM Note: maturase Location: 16812-169 9 5 bp Feature: domain Description: McrA Location: 17040-17334 bp Feature: domain Description: McrA Location: 17040-17334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT feoB (TIGR00437), FeoA (smart00899), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LR214013.1 (10787 bp)
Overview 1 RT 1: 2412-8866 bp Neighborhood of RT #1 [2412, 8907] GCD1 MPG1_transferase RVT_N RVT-GII GIIM McrA RVT_N Feature: gene Location: 2412-4940 bp Feature: domain Description: GCD1 Location: 2415-3519 bp Feature: domain Description: GCD1 Location: 2415-3519 bp Feature: domain Description: MPG1_transferase Location: 3564-4893 bp Feature: domain Description: MPG1_transferase Location: 3564-4893 bp Feature: gene Location: 5561-5752 bp Feature: gene Location: 5920-7521 bp Feature: domain Description: RVT_N Location: 5953-6199 bp Feature: domain Description: RVT_N Location: 5953-6199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6250-6880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6250-6880 bp Feature: domain Description: GIIM Note: maturase Location: 6940-7123 bp Feature: domain Description: GIIM Note: maturase Location: 6940-7123 bp Feature: domain Description: McrA Location: 7195-7462 bp Feature: domain Description: McrA Location: 7195-7462 bp Feature: gene Location: 8127-8270 bp Feature: gene Location: 8590-8907 bp Feature: domain Description: RVT_N Location: 8620-8866 bp Feature: domain Description: RVT_N Location: 8620-8866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GCD1 (COG1208), MPG1_transferase (cd05805), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LR213978.1 (12228 bp)
Overview 1 RT 1: 5194-9392 bp Neighborhood of RT #1 [5194, 9392] NrdF RVT_N RVT-GII GIIM HNHc NrdF Feature: gene Location: 5194-5355 bp Feature: gene Location: 5533-5931 bp Feature: domain Description: NrdF Location: 5548-5911 bp Feature: domain Description: NrdF Location: 5548-5911 bp Feature: gene Location: 6592-8388 bp Feature: domain Description: RVT_N Location: 6655-6901 bp Feature: domain Description: RVT_N Location: 6655-6901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6943-7651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6943-7651 bp Feature: domain Description: GIIM Note: maturase Location: 7762-7984 bp Feature: domain Description: GIIM Note: maturase Location: 7762-7984 bp Feature: domain Description: HNHc Note: nucleases Location: 8179-8320 bp Feature: domain Description: HNHc Note: nucleases Location: 8179-8320 bp Feature: gene Location: 8645-9124 bp Feature: domain Description: NrdF Location: 8648-9110 bp Feature: domain Description: NrdF Location: 8648-911 0 bp Feature: gene Location: 9258-9392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NrdF (COG0208), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LR213780.1 (56672 bp)
Overview 1 RT 1: 54287-56545 bp Neighborhood of RT #1 [54287, 56550] HTH_38 RVT_N RVT-GII Feature: gene Location: 54287-54568 bp Feature: domain Description: HTH_38 Location: 54332-54401 bp Feature: domain Description: HTH_38 Location: 54332-54401 bp Feature: gene Location: 54685-54831 bp Feature: gene Location: 55588-56550 bp Feature: domain Description: RVT_N Location: 55621-55867 bp Feature: domain Description: RVT_N Location: 55621-55867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55909-56545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55909-56545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), RVT_N (pfam13655), RVT-GII

Seq: LR213948.1 (14104 bp)
Overview 1 RT 1: 9187-13894 bp Neighborhood of RT #1 [9187, 13896] R_switched_YkoY RVT_N RVT-GII GIIM HNHc InsQ InsQ Feature: gene Location: 9187-9873 bp Feature: domain Description: R_switched_YkoY Location: 9259-9781 bp Feature: domain Description: R_switched_YkoY Location: 9259-9781 bp Feature: gene Location: 10280-10576 bp Feature: gene Location: 10491-12116 bp Feature: domain Description: RVT_N Location: 10521-10767 bp Feature: domain Description: RVT_N Location: 10521-10767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10809-11445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10809-11445 bp Feature: domain Description: GIIM Note: maturase Location: 11535-11766 bp Feature: domain Description: GIIM Note: maturase Location: 11535-11766 bp Feature: domain Description: HNHc Note: nucleases Location: 11967-12102 bp Feature: domain Description: HNHc Note: nucleases Location: 11967-12102 bp Feature: gene Location: 12829-13527 bp Feature: domain Description: InsQ Location: 12841-13486 bp Feature: domain Description: InsQ Location: 12841-13 486 bp Feature: gene Location: 13690-13896 bp Feature: domain Description: InsQ Location: 13723-13894 bp Feature: domain Description: InsQ Location: 13 723-13 894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R_switched_YkoY (TIGR03716), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675)

Seq: LR213858.1 (24488 bp)
Overview 1 RT 1: 189-4755 bp Neighborhood of RT #1 [189, 4949] RVT_N RVT-GII GIIM McrA Methyltransf_11 Methyltransf_11 Feature: gene Location: 189-470 bp Feature: gene Location: 565-2112 bp Feature: domain Description: RVT_N Location: 598-841 bp Feature: domain Description: RVT_N Location: 598-841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 895-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 895-1522 bp Feature: domain Description: GIIM Note: maturase Location: 1582-1702 bp Feature: domain Description: GIIM Note: maturase Location: 1582-1702 bp Feature: domain Description: McrA Location: 1837-2080 bp Feature: domain Description: McrA Location: 1837-2080 bp Feature: gene Location: 2238-2975 bp Feature: domain Description: Methyltransf_11 Location: 2499-2796 bp Feature: domain Description: Methyltransf_11 Location: 2499-2796 bp Feature: gene Location: 3996-4949 bp Feature: domain Description: Methyltransf_11 Location: 4449-4755 bp Feature: domain Description: Methyltransf_11 Location: 4449-4755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Methyltransf_11 (pfam08241)

Seq: LR214001.1 (11213 bp)
Overview 1 RT 1: 3729-7834 bp Neighborhood of RT #1 [3729, 7878] COG5553 McrA RVT_N RVT-GII RVT_N GIIM HNHc InsQ Feature: gene Location: 3729-4388 bp Feature: domain Description: COG5553 Location: 3858-4386 bp Feature: domain Description: COG5553 Location: 3858-4386 bp Feature: gene Location: 4654-5073 bp Feature: domain Description: McrA Location: 4699-4954 bp Feature: domain Description: McrA Location: 4699-4954 bp Feature: gene Location: 5294-5791 bp Feature: domain Description: RVT_N Location: 5297-5426 bp Feature: domain Description: RVT_N Location: 5297-5426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5468-5786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5468-5786 bp Feature: gene Location: 5937-6794 bp Feature: domain Description: RVT_N Location: 5994-6132 bp Feature: domain Description: RVT_N Location: 5994-6132 bp Feature: domain Description: GIIM Note: maturase Location: 6162-6387 bp Feature: domain Description: GIIM Note: maturase Location: 6162-6387 bp Feature: domain Description: HNHc Note: nucleases Location: 6609-6771 bp Feature: domain Description: HNHc Note: nucleases Location: 6609-6771 bp Feature: gene Location: 7681-7878 bp Feature: domain Description: InsQ Location: 7690-7834 bp Feature: domain Description: InsQ Location: 7690-7834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5553 (Predicted metal-dependent enzyme of the double-stranded beta helix superfamily ), McrA (COG4058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675)

Seq: LR213798.1 (37543 bp)
Overview 1 RT 1: 16717-24290 bp Neighborhood of RT #1 [16717, 24319] HTH_XRE YjbI YjbI YjbI Pentapeptide Pentapeptide HemolysinCabind HemolysinCabind HemolysinCabind RVT_N RVT-GII GIIM McrA SppA_67K Feature: gene Location: 16717-17091 bp Feature: domain Description: HTH_XRE Location: 16774-16912 bp Feature: domain Description: HTH_XRE Location: 16 774-16 912 bp Feature: gene Location: 17768-19600 bp Feature: domain Description: YjbI Location: 17789-18059 bp Feature: domain Description: YjbI Location: 17789-18059 bp Feature: domain Description: YjbI Location: 18077-18296 bp Feature: domain Description: YjbI Location: 18077-18296 bp Feature: domain Description: YjbI Location: 18329-18674 bp Feature: domain Description: YjbI Location: 18329-18674 bp Feature: domain Description: Pentapeptide Location: 18746-18860 bp Feature: domain Description: Pentapeptide Location: 18746-18860 bp Feature: domain Description: Pentapeptide Location: 18929-19028 bp Feature: domain Description: Pentapeptide Location: 18929-19028 bp Feature: domain Description: HemolysinCabind Location: 19061-19166 bp Feature: domain Description: HemolysinCabind Location: 19061-1916 6 bp Feature: domain Description: HemolysinCabind Location: 19172-19274 bp Feature: domain Description: HemolysinCabind Location: 19172-19274 bp Feature: domain Description: HemolysinCabind Location: 19277-19376 bp Feature: domain Description: HemolysinCabind Location: 19277-19376 bp Feature: gene Location: 19662-21476 bp Feature: domain Description: RVT_N Location: 19695-19941 bp Feature: domain Description: RVT_N Location: 19695-19941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19983-20679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19983-20679 bp Feature: domain Description: GIIM Note: maturase Location: 20763-20991 bp Feature: domain Description: GIIM Note: maturase Location: 20763-20991 bp Feature: domain Description: McrA Location: 21063-21369 bp Feature: domain Description: McrA Location: 21063-21369 bp Feature: gene Location: 22199-22369 bp Feature: gene Location: 22502-24319 bp Feature: domain Description: SppA_67K Location: 22529-24290 bp Feature: domain Description: SppA_67K Location: 22529-24290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), YjbI (COG2346), Pentapeptide (pfam00805), HemolysinCabind (pfam00353), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), SppA_67K (TIGR00705)

Seq: LR213908.1 (18153 bp)
Overview 1 RT 1: 322-4878 bp Neighborhood of RT #1 [322, 4886] RVT_N RVT-GII GIIM HNHc UgpB UgpA Feature: gene Location: 322-2127 bp Feature: domain Description: RVT_N Location: 328-559 bp Feature: domain Description: RVT_N Location: 328-559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601-1297 bp Feature: domain Description: GIIM Note: maturase Location: 1396-1627 bp Feature: domain Description: GIIM Note: maturase Location: 1396-1627 bp Feature: domain Description: HNHc Note: nucleases Location: 1858-2008 bp Feature: domain Description: HNHc Note: nucleases Location: 1858-2008 bp Feature: gene Location: 2422-3708 bp Feature: domain Description: UgpB Location: 2452-3700 bp Feature: domain Description: UgpB Location: 2452-3700 bp Feature: gene Location: 3912-4886 bp Feature: domain Description: UgpA Location: 4026-4878 bp Feature: domain Description: UgpA Location: 4026-4878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), UgpB (COG1653), UgpA (COG1175)

Seq: LR213907.1 (18256 bp)
Overview 1 RT 1: 924-6399 bp Neighborhood of RT #1 [924, 6455] InsQ RVT_N RVT-GII GIIM HNH Lrp OYE_like_FMN Feature: gene Location: 924-1829 bp Feature: domain Description: InsQ Location: 966-1758 bp Feature: domain Description: InsQ Location: 966-1758 bp Feature: gene Location: 1957-2112 bp Feature: gene Location: 2433-4331 bp Feature: domain Description: RVT_N Location: 2541-2784 bp Feature: domain Description: RVT_N Location: 2541-2784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2829-3525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2829-3525 bp Feature: domain Description: GIIM Note: maturase Location: 3624-3858 bp Feature: domain Description: GIIM Note: maturase Location: 3624-3858 bp Feature: domain Description: HNH Note: nucleases Location: 4113-4245 bp Feature: domain Description: HNH Note: nucleases Location: 4113-4245 bp Feature: gene Location: 4660-5145 bp Feature: domain Description: Lrp Location: 4684-5083 bp Feature: domain Description: Lrp Location: 4684-5083 bp Feature: gene Location: 5349-6455 bp Feature: domain Description: OYE_like_FMN Location: 5379-6399 bp Feature: domain Description: OYE_like_FMN Location: 5379-6399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Lrp (COG1522), OYE_like_FMN (cd02933)

Seq: LR214064.1 (8488 bp)
Overview 1 RT 1: 4449-7192 bp Neighborhood of RT #1 [4449, 7353] Na_symport_lg RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4449-5183 bp Feature: domain Description: Na_symport_lg Location: 4473-5118 bp Feature: domain Description: Na_symport_lg Location: 4473-5118 bp Feature: gene Location: 5241-5468 bp Feature: gene Location: 5536-7353 bp Feature: domain Description: RVT_N Location: 5575-5821 bp Feature: domain Description: RVT_N Location: 5575-5821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5863-6505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5863-6505 bp Feature: domain Description: GIIM Note: maturase Location: 6604-6838 bp Feature: domain Description: GIIM Note: maturase Location: 6604-6838 bp Feature: domain Description: HNHc Note: nucleases Location: 7039-7192 bp Feature: domain Description: HNHc Note: nucleases Location: 7039-719 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LR213905.1 (18302 bp)
Overview 1 RT 1: 10952-16500 bp Neighborhood of RT #1 [10952, 16526] IbpA YeaQ RVT_N RVT-GII RVT-GII GIIM HNH InsQ TVP38 Feature: gene Location: 10952-11395 bp Feature: domain Description: IbpA Location: 11003-11372 bp Feature: domain Description: IbpA Location: 11003-11372 bp Feature: gene Location: 11796-12071 bp Feature: domain Description: YeaQ Location: 11799-12057 bp Feature: domain Description: YeaQ Location: 11799-120 57 bp Feature: gene Location: 12850-13596 bp Feature: domain Description: RVT_N Location: 12961-13207 bp Feature: domain Description: RVT_N Location: 12961-1320 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13249-13579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13249-13579 bp Feature: gene Location: 13679-14665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13703-13964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13703-13964 bp Feature: domain Description: GIIM Note: maturase Location: 14072-14297 bp Feature: domain Description: GIIM Note: maturase Location: 14072-14297 bp Feature: domain Description: HNH Note: nucleases Location: 14522-14654 bp Feature: domain Description: HNH Note: nucleases Location: 14522-14654 bp Feature: gene Location: 14837-15844 bp Feature: domain Description: InsQ Location: 14846-15776 bp Feature: domain Description: InsQ Location: 14846-15776 bp Feature: gene Location: 15912-16526 bp Feature: domain Description: TVP38 Location: 15942-16500 bp Feature: domain Description: TVP38 Location: 15942-16500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IbpA (COG0071), YeaQ (COG2261), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), InsQ (COG0675), TVP38 (COG0398)

Seq: LR213767.1 (87944 bp)
Overview 1 RT 1: 82683-85484 bp Neighborhood of RT #1 [82683, 85492] HNH RVT-GII SDR_c PS_II_S4 Feature: gene Location: 82683-82886 bp Feature: gene Location: 82995-83183 bp Feature: domain Description: HNH Note: nucleases Location: 83001-83097 bp Feature: domain Description: HNH Note: nucleases Location: 83001-83097 bp Feature: gene Location: 83327-83542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83330-83537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83330-83537 bp Feature: gene Location: 84141-84545 bp Feature: domain Description: SDR_c Location: 84180-84501 bp Feature: domain Description: SDR_c Location: 84180-84501 bp Feature: gene Location: 84713-85492 bp Feature: domain Description: PS_II_S4 Location: 84719-85484 bp Feature: domain Description: PS_II_S4 Location: 84719-85484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), RVT-GII, SDR_c (cd05233), PS_II_S4 (TIGR03069)

Seq: LR214295.1 (1516 bp)
Overview 1 RT 1: 661-1516 bp Neighborhood of RT #1 [661, 1515] RVT_N RVT-GII Feature: gene Location: 661-1515 bp Feature: domain Description: RVT_N Location: 694-940 bp Feature: domain Description: RVT_N Location: 694-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982-1516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LR214309.1 (1342 bp)
Overview 1 RT 1: 18-444 bp Neighborhood of RT #1 [18, 494] RVT_N RVT-GII Feature: gene Location: 18-494 bp Feature: domain Description: RVT_N Location: 51-291 bp Feature: domain Description: RVT_N Location: 51-291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348-444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348-444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII