myRT

myRT report for GCA_900660425.1_strain_16-537536

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Seq: CABFOX010000011.1 (70994 bp)
Overview 1 RT 1: 17152-22513 bp Neighborhood of RT #1 [17152, 22539] SUL1 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 Feature: gene Location: 17152-18846 bp Feature: domain Description: SUL1 Location: 17164-18814 bp Feature: domain Description: SUL1 Location: 1 71 64-1 881 4 bp Feature: gene Location: 19186-20250 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19348-20143 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 9348-201 43 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20164-20239 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 201 64-20239 bp Feature: gene Location: 20153-21400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20357-21014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20357-21 01 4 bp Feature: domain Description: GIIM Note: maturase Location: 21095-21311 bp Feature: domain Description: GIIM Note: maturase Location: 21 095-21 31 1 bp Feature: gene Location: 21429-21716 bp Feature: gene Location: 21922-22539 bp Feature: domain Description: COG3436 Location: 22216-22513 bp Feature: domain Description: COG3436 Location: 2221 6-2251 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUL1 (COG0659), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase )

Seq: CABFOX010000004.1 (111729 bp)
Overview 1 RT 1: 33926-37699 bp Neighborhood of RT #1 [33926, 37699] ASCH_yqfb_like ASCH_yqfb_like RVT-DGRs Avd_like Feature: gene Location: 33926-34528 bp Feature: domain Description: ASCH_yqfb_like Location: 33953-34016 bp Feature: domain Description: ASCH_yqfb_like Location: 33953-34016 bp Feature: domain Description: ASCH_yqfb_like Location: 34247-34331 bp Feature: domain Description: ASCH_yqfb_like Location: 342 47-34331 bp Feature: gene Location: 34619-35281 bp Feature: gene Location: 35325-36482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35574-36258 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35574-362 58 bp Feature: gene Location: 36695-37048 bp Feature: domain Description: Avd_like Location: 36722-37028 bp Feature: domain Description: Avd_like Location: 3672 2 -3702 8 bp Feature: gene Location: 37106-37699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ASCH_yqfb_like (cd06552), RVT-DGRs, Avd_like (cd16376)

Seq: CABFOX010000089.1 (27419 bp)
Overview 1 RT 1: 5269-10938 bp Neighborhood of RT #1 [5269, 10946] ribD TIGR00244 RVT_N RVT-GII YkfC HNH YbaY Nnt1 Nnt1 Feature: gene Location: 5269-6402 bp Feature: domain Description: ribD Location: 5302-6370 bp Feature: domain Description: ribD Location: 53 02-63 70 bp Feature: gene Location: 6399-6902 bp Feature: domain Description: TIGR00244 Location: 6441-6879 bp Feature: domain Description: TIGR00244 Location: 6441-6879 bp Feature: gene Location: 6956-8662 bp Feature: domain Description: RVT_N Location: 7013-7250 bp Feature: domain Description: RVT_N Location: 7013 -7250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7301-7937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 01-793 7 bp Feature: domain Description: YkfC Location: 8069-8240 bp Feature: domain Description: YkfC Location: 8069-8240 bp Feature: domain Description: HNH Note: nucleases Location: 8474-8612 bp Feature: domain Description: HNH Note: nucleases Location: 8474-8612 bp Feature: gene Location: 9832-10296 bp Feature: domain Description: YbaY Location: 9862-10291 bp Feature: domain Description: YbaY Location: 9862-10291 bp Feature: gene Location: 10293-10946 bp Feature: domain Description: Nnt1 Location: 10299-10764 bp Feature: domain Description: Nnt1 Location: 10299-10764 bp Feature: domain Description: Nnt1 Location: 10770-10938 bp Feature: domain Description: Nnt1 Location: 10770-1093 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YbaY (COG3126), Nnt1 (COG3897)

Seq: CABFOX010000207.1 (6915 bp)
Overview 1 RT 1: 2567-6037 bp Neighborhood of RT #1 [2567, 6037] TnpB_IS66 InsE RVT-GII IS5 INT_RitA_C_like Feature: gene Location: 2567-2902 bp Feature: domain Description: TnpB_IS66 Location: 2585-2873 bp Feature: domain Description: TnpB_IS66 Location: 2585-2873 bp Feature: gene Location: 2899-3255 bp Feature: domain Description: InsE Location: 2938-3196 bp Feature: domain Description: InsE Location: 2938-3196 bp Feature: gene Location: 3409-5034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4093-4216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 093-4 216 bp Feature: domain Description: IS5 Location: 4240-5008 bp Feature: domain Description: IS5 Location: 4 24 0-5008 bp Feature: gene Location: 5184-5522 bp Feature: domain Description: INT_RitA_C_like Location: 5190-5505 bp Feature: domain Description: INT_RitA_C_like Location: 5190-5505 bp Feature: gene Location: 5576-6037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), InsE (COG2963), RVT-GII, IS5 (COG3039), INT_RitA_C_like (cd01188)

Seq: CABFOX010000032.1 (53745 bp)
Overview 1 RT 1: 22103-29567 bp Neighborhood of RT #1 [22103, 29567] RVT-UG12 TPR TPR Feature: gene Location: 22103-22264 bp Feature: gene Location: 22339-22872 bp Feature: gene Location: 22954-24429 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 23296-23755 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 23296-2375 5 bp Feature: gene Location: 24768-29228 bp Feature: domain Description: TPR Location: 25830-26100 bp Feature: domain Description: TPR Location: 25 830-26100 bp Feature: domain Description: TPR Location: 27057-27381 bp Feature: domain Description: TPR Location: 2705 7-27381 bp Feature: gene Location: 29331-29567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, TPR (smart00028)

Seq: CABFOX010000268.1 (2862 bp)
Overview 1 RT 1: 586-2735 bp Neighborhood of RT #1 [586, 2782] RVT_N RVT-GII GIIM HNH Feature: gene Location: 586-714 bp Feature: gene Location: 1079-2782 bp Feature: domain Description: RVT_N Location: 1136-1379 bp Feature: domain Description: RVT_N Location: 1136 -1379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-2060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-206 0 bp Feature: domain Description: GIIM Note: maturase Location: 2111-2345 bp Feature: domain Description: GIIM Note: maturase Location: 2111-2345 bp Feature: domain Description: HNH Note: nucleases Location: 2597-2735 bp Feature: domain Description: HNH Note: nucleases Location: 2597-2735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)