myRT

myRT report for GCA_900706705.1_AND01-016

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Seq: CAADIV010000361.1 (23647 bp)
Overview 1 RT 1: 2-4666 bp Neighborhood of RT #1 [2, 4878] RVT-UG5 nitrilase COG4127 TIGR02646 Feature: gene Location: 2-2575 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 32-527 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 32-527 bp Feature: domain Description: nitrilase Location: 1889-2471 bp Feature: domain Description: nitrilase Location: 1 889-2471 bp Feature: gene Location: 2945-3937 bp Feature: domain Description: COG4127 Location: 2951-3926 bp Feature: domain Description: COG41 27 Location: 2951 -3926 bp Feature: gene Location: 4000-4878 bp Feature: domain Description: TIGR02646 Location: 4213-4666 bp Feature: domain Description: TIGR02646 Location: 421 3-4666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), TIGR02646 (TIGR02646 family protein)

Seq: CAADIV010000172.1 (8463 bp)
Overview 1 RT 1: 4405-8236 bp Neighborhood of RT #1 [4405, 8283] clpP tig RVT_N RVT-GII GIIM HNH Feature: gene Location: 4405-5046 bp Feature: domain Description: clpP Location: 4459-5035 bp Feature: domain Description: clpP Location: 4459-5035 bp Feature: gene Location: 5140-6450 bp Feature: domain Description: tig Location: 5143-6421 bp Feature: domain Description: tig Location: 5143-642 1 bp Feature: gene Location: 6580-8283 bp Feature: domain Description: RVT_N Location: 6637-6880 bp Feature: domain Description: RVT_N Location: 6637-6880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6925-7561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692 5-7561 bp Feature: domain Description: GIIM Note: maturase Location: 7615-7846 bp Feature: domain Description: GIIM Note: maturase Location: 7615-7846 bp Feature: domain Description: HNH Note: nucleases Location: 8098-8236 bp Feature: domain Description: HNH Note: nucleases Location: 8098-82 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CAADIV010000643.1 (2763 bp)
Overview 1 RT 1: 2-2524 bp Neighborhood of RT #1 [2, 2571] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-256 bp Feature: gene Location: 455-583 bp Feature: gene Location: 853-2571 bp Feature: domain Description: RVT_N Location: 910-1147 bp Feature: domain Description: RVT_N Location: 910-1147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1198-1849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1198-1849 bp Feature: domain Description: GIIM Note: maturase Location: 1903-2134 bp Feature: domain Description: GIIM Note: maturase Location: 1903 -213 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2368-2524 bp Feature: domain Description: HNHc Note: nucleases Location: 23 68-2524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CAADIV010000886.1 (7637 bp)
Overview 1 RT 1: 1566-7402 bp Neighborhood of RT #1 [1566, 7458] PRK10770 LptD RVT_N RVT-GII YkfC HNH Feature: gene Location: 1566-2780 bp Feature: domain Description: PRK10770 Location: 1578-2772 bp Feature: domain Description: PRK10770 Location: 1578-2772 bp Feature: gene Location: 2839-5613 bp Feature: domain Description: LptD Location: 3034-5599 bp Feature: domain Description: LptD Location: 3034 -5599 bp Feature: gene Location: 5746-7458 bp Feature: domain Description: RVT_N Location: 5803-6046 bp Feature: domain Description: RVT_N Location: 5803-604 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6091-6727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6091-6727 bp Feature: domain Description: YkfC Location: 6934-7087 bp Feature: domain Description: YkfC Location: 6934 -7087 bp Feature: domain Description: HNH Note: nucleases Location: 7264-7402 bp Feature: domain Description: HNH Note: nucleases Location: 7264 -74 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)