myRT

myRT report for GCA_900706715.1_28193_D01

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Seq: CAADJA010000002.1 (5913003 bp)
Overview 1 RT 1: 915172-919496 bp 2 RT 2: 946353-949195 bp 3 RT 3: 1891895-1895977 bp 4 RT 4: 1929470-1931213 bp 5 RT 5: 2713264-2719353 bp 6 RT 6: 4240062-4243143 bp 7 RT 7: 4378289-4382214 bp 8 RT 8: 4391342-4395684 bp 9 RT 9: 5034939-5038784 bp 10 RT 10: 5085043-5088864 bp 11 RT 11: 5334334-5338328 bp 12 RT 12: 5652558-5656628 bp 13 RT 13: 5906291-5910452 bp Neighborhood of RT #1 [915172, 919543] PRK15023 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #2 [946353, 949195] Avd_like RVT-DGRs Neighborhood of RT #3 [1891895, 1895977] RVT-UG4 Neighborhood of RT #4 [1929470, 1931239] RVT-UG4 InsA Neighborhood of RT #5 [2713264, 2719355] dgt PRK11477 RVT-Retrons galactar-dH20 Neighborhood of RT #6 [4240062, 4243143] RVT-UG4 Neighborhood of RT #7 [4378289, 4382214] RVT-UG4 Neighborhood of RT #8 [4391342, 4395863] YeeP RVT_N RVT-GII GIIM HNHc DUF4234 DUF4234 Neighborhood of RT #9 [5034939, 5038784] WzzB InsA RVT-UG4 Neighborhood of RT #10 [5085043, 5088864] RVT_N RVT-GII GIIM HNHc LomR Neighborhood of RT #11 [5334334, 5338507] YeeP YeeP RVT_N RVT-GII GIIM HNHc DUF4234 Neighborhood of RT #12 [5652558, 5656657] RVT-UG4 RVT-UG4 InsA Neighborhood of RT #13 [5906291, 5910452] RVT-UG4 RVT-UG4 Feature: gene Location: 915172-916278 bp Feature: domain Description: PRK15023 Location: 915181-916267 bp Feature: domain Description: PRK1 5023 Location: 91 51 81 -91 6267 bp Feature: gene Location: 916369-916518 bp Feature: gene Location: 916544-917656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916745-917399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 6745-91 7399 bp Feature: domain Description: GIIM Note: maturase Location: 917477-917627 bp Feature: domain Description: GIIM Note: maturase Location: 91 7477-91 7627 bp Feature: gene Location: 917641-918276 bp Feature: gene Location: 918278-919543 bp Feature: domain Description: LZ_Tnp_IS66 Location: 918419-918638 bp Feature: domain Description: LZ_Tnp_IS66 Location: 91 841 9-91 8638 bp Feature: domain Description: zf-IS66 Location: 918662-918788 bp Feature: domain Description: zf-IS66 Location: 91 8662-91 8788 bp Feature: domain Description: DDE_Tnp_IS66 Location: 918833-919496 bp Feature: domain Description: DDE_Tnp_IS66 Location: 91 8833-91 9496 bp Feature: gene Location: 946353-946676 bp Feature: gene Location: 946726-947127 bp Feature: domain Description: Avd_like Location: 946756-947086 bp Feature: domain Description: Avd_like Location: 946756-947086 bp Feature: gene Location: 947126-948127 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 947309-948011 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 947309-94801 1 bp Feature: gene Location: 948343-948621 bp Feature: gene Location: 948728-949195 bp Feature: gene Location: 1891895-1892071 bp Feature: gene Location: 1892204-1892506 bp Feature: gene Location: 1892699-1893490 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1893053-1893251 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 893053-1 893251 bp Feature: gene Location: 1893719-1894909 bp Feature: gene Location: 1895114-1895977 bp Feature: gene Location: 1929470-1930000 bp Feature: gene Location: 1930046-1930264 bp Feature: gene Location: 1930249-1930632 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1930291-1930558 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 930291 -1 930558 bp Feature: gene Location: 1930719-1930910 bp Feature: gene Location: 1931048-1931239 bp Feature: domain Description: InsA Location: 1931075-1931213 bp Feature: domain Description: InsA Location: 1 931 075-1 931 21 3 bp Feature: gene Location: 2713264-2714760 bp Feature: domain Description: dgt Location: 2713273-2714755 bp Feature: domain Description: dgt Location: 271 3273-271 4755 bp Feature: gene Location: 2714992-2716146 bp Feature: domain Description: PRK11477 Location: 2714995-2716144 bp Feature: domain Description: PRK1 1 477 Location: 271 4995-271 61 44 bp Feature: gene Location: 2716514-2717440 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2716613-2717162 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 271 661 3-271 71 62 bp Feature: gene Location: 2717452-2717655 bp Feature: gene Location: 2717793-2719355 bp Feature: domain Description: galactar-dH20 Location: 2717826-2719353 bp Feature: domain Description: galactar-dH20 Location: 271 7826-271 9353 bp Feature: gene Location: 4240062-4240238 bp Feature: gene Location: 4240355-4240684 bp Feature: gene Location: 4240863-4241864 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4241217-4241658 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4241 21 7-4241 658 bp Feature: gene Location: 4241870-4242520 bp Feature: gene Location: 4242517-4243143 bp Feature: gene Location: 4378289-4378618 bp Feature: gene Location: 4378741-4378965 bp Feature: gene Location: 4379031-4379801 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4379151-4379592 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 43791 51 -4379592 bp Feature: gene Location: 4379824-4381113 bp Feature: gene Location: 4381318-4382214 bp Feature: gene Location: 4391342-4391518 bp Feature: gene Location: 4391693-4392580 bp Feature: domain Description: YeeP Location: 4391717-4392578 bp Feature: domain Description: YeeP Location: 4391 71 7-4392578 bp Feature: gene Location: 4392742-4394430 bp Feature: domain Description: RVT_N Location: 4392805-4393042 bp Feature: domain Description: RVT_N Location: 4392805-4393042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4393093-4393735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4393093-4393735 bp Feature: domain Description: GIIM Note: maturase Location: 4393786-4394020 bp Feature: domain Description: GIIM Note: maturase Location: 4393786-4394020 bp Feature: domain Description: HNHc Note: nucleases Location: 4394251-4394392 bp Feature: domain Description: HNHc Note: nucleases Location: 4394251 -4394392 bp Feature: gene Location: 4394596-4394997 bp Feature: gene Location: 4395354-4395863 bp Feature: domain Description: DUF4234 Location: 4395393-4395477 bp Feature: domain Description: DUF4234 Location: 4395393-4395477 bp Feature: domain Description: DUF4234 Location: 4395612-4395684 bp Feature: domain Description: DUF4234 Location: 439561 2-4395684 bp Feature: gene Location: 5034939-5036063 bp Feature: domain Description: WzzB Location: 5035023-5036058 bp Feature: domain Description: WzzB Location: 5035023-5036058 bp Feature: gene Location: 5036191-5036598 bp Feature: domain Description: InsA Location: 5036422-5036569 bp Feature: domain Description: InsA Location: 5036422-5036569 bp Feature: gene Location: 5036890-5037336 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5036893-5037094 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5036893-5037094 bp Feature: gene Location: 5037363-5038532 bp Feature: gene Location: 5038536-5038784 bp Feature: gene Location: 5085043-5085192 bp Feature: gene Location: 5085246-5085647 bp Feature: gene Location: 5085813-5087501 bp Feature: domain Description: RVT_N Location: 5085876-5086113 bp Feature: domain Description: RVT_N Location: 5085876-50861 1 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5086164-5086806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50861 64-5086806 bp Feature: domain Description: GIIM Note: maturase Location: 5086857-5087091 bp Feature: domain Description: GIIM Note: maturase Location: 5086857-5087091 bp Feature: domain Description: HNHc Note: nucleases Location: 5087322-5087463 bp Feature: domain Description: HNHc Note: nucleases Location: 5087322-5087463 bp Feature: gene Location: 5087714-5088463 bp Feature: domain Description: LomR Location: 5087738-5088461 bp Feature: domain Description: LomR Location: 5087738-5088461 bp Feature: gene Location: 5088634-5088864 bp Feature: gene Location: 5334334-5334813 bp Feature: domain Description: YeeP Location: 5334358-5334769 bp Feature: domain Description: YeeP Location: 5334358-5334769 bp Feature: gene Location: 5334990-5335223 bp Feature: domain Description: YeeP Location: 5334999-5335221 bp Feature: domain Description: YeeP Location: 5334999-5335221 bp Feature: gene Location: 5335385-5337073 bp Feature: domain Description: RVT_N Location: 5335448-5335685 bp Feature: domain Description: RVT_N Location: 5335448-5335685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5335736-5336378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5335736-5336378 bp Feature: domain Description: GIIM Note: maturase Location: 5336429-5336663 bp Feature: domain Description: GIIM Note: maturase Location: 5336429-5336663 bp Feature: domain Description: HNHc Note: nucleases Location: 5336894-5337035 bp Feature: domain Description: HNHc Note: nucleases Location: 5336894-5337035 bp Feature: gene Location: 5337239-5337640 bp Feature: gene Location: 5337998-5338507 bp Feature: domain Description: DUF4234 Location: 5338040-5338328 bp Feature: domain Description: DUF4234 Location: 5338040-5338328 bp Feature: gene Location: 5652558-5653421 bp Feature: gene Location: 5653626-5654693 bp Feature: gene Location: 5654859-5655224 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5654862-5655015 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5654862-565501 5 bp Feature: gene Location: 5655239-5655862 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5655593-5655773 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5655593-5655773 bp Feature: gene Location: 5656031-5656357 bp Feature: gene Location: 5656475-5656657 bp Feature: domain Description: InsA Location: 5656490-5656628 bp Feature: domain Description: InsA Location: 5656490-5656628 bp Feature: gene Location: 5906291-5906530 bp Feature: gene Location: 5906652-5906978 bp Feature: gene Location: 5907147-5907770 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5907501-5907681 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5907501 -5907681 bp Feature: gene Location: 5907785-5908150 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5907788-5907941 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5907788-5907941 bp Feature: gene Location: 5908167-5909384 bp Feature: gene Location: 5909589-5910452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15023 (L-serine deaminase; Provisional), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), Avd_like (cd16376), RVT-DGRs, RVT-UG4, InsA (COG3677)
dgt (PRK04926), PRK11477 (CdaR family transcriptional regulator), RVT-Retrons, galactar-dH20 (TIGR03248), YeeP (COG3596), RVT_N (pfam13655), HNHc (smart00507), DUF4234 (pfam14018), WzzB (COG3765), LomR (COG3637)