myRT

myRT report for GCA_900752705.1_ERS396299_48

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Seq: CAADWL010000317.1 (72470 bp)
Overview 1 RT 1: 34008-44227 bp Neighborhood of RT #1 [34008, 44238] DUF1566 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 34008-35837 bp Feature: gene Location: 35900-36253 bp Feature: gene Location: 36244-37665 bp Feature: domain Description: DUF1566 Location: 36316-36460 bp Feature: domain Description: DUF1 566 Location: 3631 6-36460 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36649-37390 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36649-37390 bp Feature: gene Location: 37678-38079 bp Feature: domain Description: Avd_like Location: 37717-38056 bp Feature: domain Description: Avd_like Location: 3771 7-38056 bp Feature: gene Location: 38209-44238 bp Feature: domain Description: DUF1566 Location: 43921-44227 bp Feature: domain Description: DUF1 566 Location: 43921 -44227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: CAADWL010000115.1 (10232 bp)
Overview 1 RT 1: 543-9620 bp Neighborhood of RT #1 [543, 9982] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 Feature: gene Location: 543-2729 bp Feature: gene Location: 2934-4067 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3258-3804 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 58-3804 bp Feature: gene Location: 4109-9982 bp Feature: domain Description: DUF4011 Location: 5273-5783 bp Feature: domain Description: DUF4011 Location: 52 73-5783 bp Feature: domain Description: DEXXQc_SF1 Location: 6122-6731 bp Feature: domain Description: DEXXQc_SF1 Location: 612 2 -6731 bp Feature: domain Description: DEXXQc_SF1 Location: 7394-8309 bp Feature: domain Description: DEXXQc_SF1 Location: 7394-8309 bp Feature: domain Description: KOG1803 Location: 8444-8822 bp Feature: domain Description: KOG1803 Location: 8444-882 2 bp Feature: domain Description: MTES_1575 Location: 8981-9269 bp Feature: domain Description: MTES_1575 Location: 8981-92 69 bp Feature: domain Description: DUF3320 Location: 9500-9620 bp Feature: domain Description: DUF332 0 Location: 9500-962 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: CAADWL010000237.1 (11864 bp)
Overview 1 RT 1: 3-4766 bp Neighborhood of RT #1 [3, 4766] DUF4143 RVT-UG5 Feature: gene Location: 3-647 bp Feature: domain Description: DUF4143 Location: 111-462 bp Feature: domain Description: DUF4143 Location: 111-462 bp Feature: gene Location: 678-3563 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1143-1593 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1143 -1593 bp Feature: gene Location: 3595-4212 bp Feature: gene Location: 4296-4766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4143 (pfam13635), RVT-UG5

Seq: CAADWL010000075.1 (4244 bp)
Overview 1 RT 1: 109-3315 bp Neighborhood of RT #1 [109, 3315] RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 109-1917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1195 bp Feature: domain Description: Intron_maturas2 Location: 1273-1576 bp Feature: domain Description: Intron_maturas2 Location: 1273-1576 bp Feature: gene Location: 1907-2827 bp Feature: domain Description: Toprim_2 Location: 2441-2720 bp Feature: domain Description: Toprim_2 Location: 24 4 1-2720 bp Feature: gene Location: 2857-3315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: CAADWL010000279.1 (52137 bp)
Overview 1 RT 1: 23859-28782 bp Neighborhood of RT #1 [23859, 28793] DUF1566 Avd_like RVT-DGRs SusE DUF5111 DUF5114 CBM_SusE-F_like_u1 CBM_SusE-F_like_u1 Feature: gene Location: 23859-24671 bp Feature: domain Description: DUF1566 Location: 24393-24645 bp Feature: domain Description: DUF15 66 Location: 24393-24645 bp Feature: gene Location: 24817-25197 bp Feature: domain Description: Avd_like Location: 24844-25150 bp Feature: domain Description: Avd_like Location: 24844-25 15 0 bp Feature: gene Location: 25212-26633 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25584-26289 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25 5 84-26289 bp Feature: gene Location: 26599-26874 bp Feature: gene Location: 27051-28793 bp Feature: domain Description: SusE Location: 27117-27450 bp Feature: domain Description: SusE Location: 27117-2745 0 bp Feature: domain Description: DUF5111 Location: 27474-27831 bp Feature: domain Description: DUF5 111 Location: 27474-27831 bp Feature: domain Description: DUF5114 Location: 27843-28131 bp Feature: domain Description: DUF5 114 Location: 27843-28131 bp Feature: domain Description: CBM_SusE-F_like_u1 Location: 28203-28506 bp Feature: domain Description: CBM_SusE-F_like_u1 Location: 28203-285 06 bp Feature: domain Description: CBM_SusE-F_like_u1 Location: 28563-28782 bp Feature: domain Description: CBM_SusE-F_like_u1 Location: 285 63-28782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, SusE (pfam14292), DUF5111 (pfam17138), DUF5114 (pfam17141), CBM_SusE-F_like_u1 (cd12967)

Seq: CAADWL010000347.1 (2882 bp)
Overview 1 RT 1: 327-2880 bp Neighborhood of RT #1 [327, 2880] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 327-518 bp Feature: gene Location: 645-2441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1728 bp Feature: domain Description: Intron_maturas2 Location: 1806-2088 bp Feature: domain Description: Intron_maturas2 Location: 1806 -2088 bp Feature: domain Description: HNHc Note: nucleases Location: 2268-2421 bp Feature: domain Description: HNHc Note: nucleases Location: 226 8-2421 bp Feature: gene Location: 2459-2617 bp Feature: gene Location: 2653-2880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAADWL010000264.1 (2873 bp)
Overview 1 RT 1: 3-2873 bp Neighborhood of RT #1 [3, 2872] Bac_Flav_CT_G RVT-GII KOG4768 Bac_Flav_CT_G Feature: gene Location: 3-158 bp Feature: domain Description: Bac_Flav_CT_G Location: 6-141 bp Feature: domain Description: Bac_Flav_CT_G Location: 6-141 bp Feature: gene Location: 708-2027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972-1794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97 2-17 94 bp Feature: gene Location: 2097-2519 bp Feature: domain Description: KOG4768 Location: 2103-2508 bp Feature: domain Description: KOG47 68 Location: 2103-2508 bp Feature: gene Location: 2600-2872 bp Feature: domain Description: Bac_Flav_CT_G Location: 2630-2873 bp Feature: domain Description: Bac_Flav_CT_G Location: 2630-287 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: CAADWL010000224.1 (30070 bp)
Overview 1 RT 1: 1-3688 bp Neighborhood of RT #1 [1, 3688] RVT-UG27 Feature: gene Location: 1-1182 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 103-739 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 103-739 bp Feature: gene Location: 2206-2664 bp Feature: gene Location: 2699-3688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27