myRT

myRT report for GCA_900752895.1_ERS396312_38

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Seq: CAADXE010000309.1 (43828 bp)
Overview 1 RT 1: 9875-18005 bp Neighborhood of RT #1 [9875, 18019] DNA_processg_A RVT-Retrons propeller_TolB propeller_TolB propeller_TolB propeller_TolB Peptidase_S41_TRI Feature: gene Location: 9875-10801 bp Feature: domain Description: DNA_processg_A Location: 10082-10556 bp Feature: domain Description: DNA_processg_A Location: 1 0082-1 0556 bp Feature: gene Location: 10837-11625 bp Feature: gene Location: 11987-13456 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12191-12821 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 21 91 -1 2821 bp Feature: gene Location: 13464-14348 bp Feature: gene Location: 14786-18019 bp Feature: domain Description: propeller_TolB Location: 14879-15338 bp Feature: domain Description: propeller_TolB Location: 1 4879-1 5338 bp Feature: domain Description: propeller_TolB Location: 15374-15533 bp Feature: domain Description: propeller_TolB Location: 1 5374-1 5533 bp Feature: domain Description: propeller_TolB Location: 15638-15938 bp Feature: domain Description: propeller_TolB Location: 1 5638-1 5938 bp Feature: domain Description: propeller_TolB Location: 16031-16370 bp Feature: domain Description: propeller_TolB Location: 1 6031 -1 6370 bp Feature: domain Description: Peptidase_S41_TRI Location: 16901-18005 bp Feature: domain Description: Peptidase_S41 _TRI Location: 1 6901 -1 8005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_processg_A (pfam02481), RVT-Retrons, propeller_TolB (TIGR02800), Peptidase_S41_TRI (cd07562)

Seq: CAADXE010000103.1 (1886 bp)
Overview 1 RT 1: 53-1175 bp Neighborhood of RT #1 [53, 1360] RVT-GII GIIM Feature: gene Location: 53-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 60-884 bp Feature: domain Description: GIIM Note: maturase Location: 962-1175 bp Feature: domain Description: GIIM Note: maturase Location: 962 -1175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAADXE010000206.1 (2490 bp)
Overview 1 RT 1: 195-2029 bp Neighborhood of RT #1 [195, 2376] RVT-GII Intron_maturas2 Feature: gene Location: 195-530 bp Feature: gene Location: 565-2376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: domain Description: Intron_maturas2 Location: 1720-2029 bp Feature: domain Description: Intron_maturas2 Location: 1720-2029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: CAADXE010000090.1 (2500 bp)
Overview 1 RT 1: 678-1986 bp Neighborhood of RT #1 [678, 2384] RVT_N RVT-GII GIIM Feature: gene Location: 678-2384 bp Feature: domain Description: RVT_N Location: 741-984 bp Feature: domain Description: RVT_N Location: 74 1-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1695 bp Feature: domain Description: GIIM Note: maturase Location: 1752-1986 bp Feature: domain Description: GIIM Note: maturase Location: 1752-1986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAADXE010000314.1 (3967 bp)
Overview 1 RT 1: 450-3437 bp Neighborhood of RT #1 [450, 3437] RVT-CRISPR Cas1_I-II-III Feature: gene Location: 450-659 bp Feature: gene Location: 892-3189 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1126-1735 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1126-1735 bp Feature: domain Description: Cas1_I-II-III Location: 2191-3151 bp Feature: domain Description: Cas1_I-II-III Location: 2191-315 1 bp Feature: gene Location: 3234-3437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: CAADXE010000142.1 (2419 bp)
Overview 1 RT 1: 122-2240 bp Neighborhood of RT #1 [122, 2240] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176 -419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 4-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 116 6 -1397 bp Feature: gene Location: 2091-2240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAADXE010000092.1 (1201 bp)
Overview 1 RT 1: 408-1194 bp Neighborhood of RT #1 [408, 1199] RVT-GII Feature: gene Location: 408-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-1194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 38-1194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAADXE010000207.1 (2807 bp)
Overview 1 RT 1: 93-1860 bp Neighborhood of RT #1 [93, 2066] RVT-GII HNHc Feature: gene Location: 93-2066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: domain Description: HNHc Note: nucleases Location: 1722-1860 bp Feature: domain Description: HNHc Note: nucleases Location: 1722-18 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)