myRT

myRT report for GCA_900753215.1_ERS396338_35

Download annotations/find similar RTs

Seq: CAADYH010000008.1 (11229 bp)
Overview 1 RT 1: 651-10877 bp Neighborhood of RT #1 [651, 11227] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 Feature: gene Location: 651-1487 bp Feature: domain Description: PDDEXK_2 Location: 672-1350 bp Feature: domain Description: PDDEXK_2 Location: 672-1 350 bp Feature: gene Location: 1656-3863 bp Feature: gene Location: 4071-5201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4392-4935 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4392-4935 bp Feature: gene Location: 5252-11227 bp Feature: domain Description: DUF4011 Location: 6416-6929 bp Feature: domain Description: DUF401 1 Location: 641 6-6929 bp Feature: domain Description: DEXXQc_SF1 Location: 7268-7697 bp Feature: domain Description: DEXXQc_SF1 Location: 7268-7697 bp Feature: domain Description: DEXXQc_SF1 Location: 8705-9455 bp Feature: domain Description: DEXXQc_SF1 Location: 8705-9455 bp Feature: domain Description: TIGR00376 Location: 9584-9974 bp Feature: domain Description: TIGR00376 Location: 9584-9974 bp Feature: domain Description: MTES_1575 Location: 10127-10412 bp Feature: domain Description: MTES_1 575 Location: 1 01 27-1 041 2 bp Feature: domain Description: DUF3320 Location: 10742-10877 bp Feature: domain Description: DUF3320 Location: 1 0742-1 0877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: CAADYH010000219.1 (4406 bp)
Overview 1 RT 1: 991-4399 bp Neighborhood of RT #1 [991, 4404] DUF3873 RVT-AbiP2 DUF3872 TraO Feature: gene Location: 991-1209 bp Feature: domain Description: DUF3873 Location: 1000-1195 bp Feature: domain Description: DUF3873 Location: 1000-1195 bp Feature: gene Location: 1225-1707 bp Feature: gene Location: 1823-3340 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2264-2720 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 2 64-2 72 0 bp Feature: gene Location: 3391-3831 bp Feature: domain Description: DUF3872 Location: 3421-3814 bp Feature: domain Description: DUF3872 Location: 342 1-3814 bp Feature: gene Location: 3847-4404 bp Feature: domain Description: TraO Location: 3901-4399 bp Feature: domain Description: TraO Location: 3901-4399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3873 (pfam12989), RVT-AbiP2, DUF3872 (pfam12988), TraO (pfam10626)

Seq: CAADYH010000040.1 (29150 bp)
Overview 1 RT 1: 17176-21277 bp Neighborhood of RT #1 [17176, 21277] DUF4326 TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 17176-17709 bp Feature: domain Description: DUF4326 Location: 17191-17446 bp Feature: domain Description: DUF43 26 Location: 17191-17446 bp Feature: gene Location: 17927-19153 bp Feature: domain Description: TraG-D_C Location: 18509-18842 bp Feature: domain Description: TraG-D_C Location: 18509-18842 bp Feature: gene Location: 19158-20810 bp Feature: domain Description: RVT_N Location: 19212-19455 bp Feature: domain Description: RVT_N Location: 19212-19455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19500-20148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19500-20148 bp Feature: domain Description: GIIM Note: maturase Location: 20202-20433 bp Feature: domain Description: GIIM Note: maturase Location: 20202-2043 3 bp Feature: gene Location: 20976-21110 bp Feature: gene Location: 21128-21277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4326 (pfam14216), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAADYH010000027.1 (1522 bp)
Overview 1 RT 1: 51-645 bp Neighborhood of RT #1 [51, 1520] RVT-GII Feature: gene Location: 51-1520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54-645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 -64 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAADYH010000195.1 (64350 bp)
Overview 1 RT 1: 39498-42674 bp Neighborhood of RT #1 [39498, 42674] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 39498-39842 bp Feature: domain Description: Gp49 Location: 39543-39804 bp Feature: domain Description: Gp49 Location: 395 43-39804 bp Feature: gene Location: 39839-40141 bp Feature: domain Description: HTH_XRE Location: 39944-40103 bp Feature: domain Description: HTH_XRE Location: 39944-40103 bp Feature: gene Location: 40382-41869 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40766-41369 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40766-41369 bp Feature: gene Location: 41938-42420 bp Feature: gene Location: 42423-42674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: CAADYH010000106.1 (2276 bp)
Overview 1 RT 1: 631-1903 bp Neighborhood of RT #1 [631, 2274] RVT_N RVT-GII GIIM Feature: gene Location: 631-2274 bp Feature: domain Description: RVT_N Location: 685-928 bp Feature: domain Description: RVT_N Location: 6 85-928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-16 18 bp Feature: domain Description: GIIM Note: maturase Location: 1672-1903 bp Feature: domain Description: GIIM Note: maturase Location: 16 72-1903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAADYH010000079.1 (27685 bp)
Overview 1 RT 1: 5416-8796 bp Neighborhood of RT #1 [5416, 8888] COG3943 RVT-Retrons HTH_17 Feature: gene Location: 5416-5781 bp Feature: domain Description: COG3943 Location: 5455-5713 bp Feature: domain Description: COG3943 Location: 5455-57 13 bp Feature: gene Location: 6047-6928 bp Feature: gene Location: 6959-7816 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7121-7646 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7 121-7 646 bp Feature: gene Location: 7842-8057 bp Feature: gene Location: 8523-8888 bp Feature: domain Description: HTH_17 Location: 8658-8796 bp Feature: domain Description: HTH_17 Location: 8658-87 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728)