myRT

myRT report for GCA_900753235.1_ERS396338_18

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Seq: CAADYI010000042.1 (1522 bp)
Overview 1 RT 1: 51-645 bp Neighborhood of RT #1 [51, 1520] RVT-GII Feature: gene Location: 51-1520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54-645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54-645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAADYI010000170.1 (40982 bp)
Overview 1 RT 1: 3-8799 bp Neighborhood of RT #1 [3, 8804] RVT-GII GIIM RVT-GII GH43-like OMP_RagA_SusC Feature: gene Location: 3-509 bp Feature: gene Location: 1031-2437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373-1991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373-1991 bp Feature: domain Description: GIIM Note: maturase Location: 2048-2267 bp Feature: domain Description: GIIM Note: maturase Location: 2 048-2 2 67 bp Feature: gene Location: 3041-3364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3050-3242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3050-32 42 bp Feature: gene Location: 3624-5168 bp Feature: domain Description: GH43-like Location: 3864-4674 bp Feature: domain Description: GH43-like Location: 3864-4674 bp Feature: gene Location: 5634-8804 bp Feature: domain Description: OMP_RagA_SusC Location: 5763-8799 bp Feature: domain Description: OMP_RagA_SusC Location: 5763-8799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GH43-like (cd08986), OMP_RagA_SusC (TIGR04056)

Seq: CAADYI010000257.1 (14913 bp)
Overview 1 RT 1: 5734-7706 bp Neighborhood of RT #1 [5734, 7792] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Feature: gene Location: 5734-6150 bp Feature: domain Description: Translocase_SecB Location: 5791-6115 bp Feature: domain Description: Translocase_SecB Location: 5791-6115 bp Feature: gene Location: 6179-6412 bp Feature: gene Location: 6817-7137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6820-7057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6820-7057 bp Feature: gene Location: 7194-7496 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7242-7479 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7242-7479 bp Feature: gene Location: 7592-7792 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7604-7706 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7604-7706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817)

Seq: CAADYI010000380.1 (11045 bp)
Overview 1 RT 1: 8579-11044 bp Neighborhood of RT #1 [8579, 11044] Toprim_2 RVT-GII Intron_maturas2 DUF4134 Feature: gene Location: 8579-8989 bp Feature: domain Description: Toprim_2 Location: 8690-8975 bp Feature: domain Description: Toprim_2 Location: 8690-8975 bp Feature: gene Location: 9118-9489 bp Feature: gene Location: 9461-10384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9470-9662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 70-9662 bp Feature: domain Description: Intron_maturas2 Location: 9731-10043 bp Feature: domain Description: Intron_maturas2 Location: 9731-1004 3 bp Feature: gene Location: 10426-10692 bp Feature: domain Description: DUF4134 Location: 10477-10675 bp Feature: domain Description: DUF4 134 Location: 104 77-10675 bp Feature: gene Location: 10673-11044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), DUF4134 (pfam13572)

Seq: CAADYI010000349.1 (26775 bp)
Overview 1 RT 1: 6598-12000 bp Neighborhood of RT #1 [6598, 12014] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc TrwB_AAD_bind TraG-D_C PLDc_Nuc_like_unchar2 Feature: gene Location: 6598-7176 bp Feature: domain Description: TraO Location: 6670-7171 bp Feature: domain Description: TraO Location: 6670-7171 bp Feature: gene Location: 7178-8059 bp Feature: domain Description: Bac_Flav_CT_N Location: 7301-8039 bp Feature: domain Description: Bac_Flav_CT_N Location: 7301-8039 bp Feature: gene Location: 8049-9518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8079-8796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8079-8796 bp Feature: domain Description: Intron_maturas2 Location: 8955-9177 bp Feature: domain Description: Intron_maturas2 Location: 895 5 -9177 bp Feature: domain Description: HNHc Note: nucleases Location: 9351-9492 bp Feature: domain Description: HNHc Note: nucleases Location: 935 1-9492 bp Feature: gene Location: 9505-11169 bp Feature: domain Description: TrwB_AAD_bind Location: 9769-9877 bp Feature: domain Description: TrwB_AAD_bind Location: 9769-9877 bp Feature: domain Description: TraG-D_C Location: 10546-10876 bp Feature: domain Description: TraG-D_C Location: 105 46-10876 bp Feature: gene Location: 11205-12014 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 11610-12000 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 11610-12000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TrwB_AAD_bind (pfam10412), TraG-D_C (pfam12696), PLDc_Nuc_like_unchar2 (cd09174)

Seq: CAADYI010000299.1 (8656 bp)
Overview 1 RT 1: 4196-8207 bp Neighborhood of RT #1 [4196, 8548] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 4196-5647 bp Feature: gene Location: 5839-6750 bp Feature: domain Description: Toprim_2 Location: 6373-6661 bp Feature: domain Description: Toprim_2 Location: 6 373-6 6 6 1 bp Feature: gene Location: 6740-8548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7004-7826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7004-7826 bp Feature: domain Description: Intron_maturas2 Location: 7922-8207 bp Feature: domain Description: Intron_maturas2 Location: 7922-8207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: CAADYI010000204.1 (29777 bp)
Overview 1 RT 1: 2601-9242 bp Neighborhood of RT #1 [2601, 9298] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 2601-4292 bp Feature: domain Description: REC Location: 3408-3639 bp Feature: domain Description: REC Location: 3408-3639 bp Feature: gene Location: 4301-4945 bp Feature: gene Location: 4923-7142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5124-5709 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5124-57 09 bp Feature: gene Location: 7413-8384 bp Feature: domain Description: Phage_int_SAM_5 Location: 7452-7695 bp Feature: domain Description: Phage_int_SAM_5 Location: 7 452-7 695 bp Feature: domain Description: INTN1_C_like Location: 7779-8298 bp Feature: domain Description: INTN1_C_like Location: 7 7 7 9-8298 bp Feature: gene Location: 8720-9298 bp Feature: domain Description: NGN_SP_UpxY Location: 8798-9080 bp Feature: domain Description: NGN_SP_UpxY Location: 87 98-9080 bp Feature: domain Description: KOW_NusG Location: 9131-9242 bp Feature: domain Description: KOW_NusG Location: 9131-9242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)