myRT

myRT report for GCA_900753825.1_ERS396395_36

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Seq: CAAEAO010000421.1 (3373 bp)
Overview 1 RT 1: 3-3371 bp Neighborhood of RT #1 [3, 3371] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-611 bp Feature: domain Description: KOG1000 Location: 315-519 bp Feature: domain Description: KOG1 000 Location: 31 5-51 9 bp Feature: gene Location: 803-2590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1073-1865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 073-1 865 bp Feature: domain Description: Intron_maturas2 Location: 1970-2186 bp Feature: domain Description: Intron_maturas2 Location: 1 970-21 86 bp Feature: domain Description: HNHc Note: nucleases Location: 2366-2552 bp Feature: domain Description: HNHc Note: nucleases Location: 2366-2552 bp Feature: gene Location: 3081-3371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAEAO010000577.1 (3913 bp)
Overview 1 RT 1: 321-2900 bp Neighborhood of RT #1 [321, 2920] Phage_XkdX RVT-DGRs Phage_holin_Dp1 Feature: gene Location: 321-464 bp Feature: domain Description: Phage_XkdX Location: 342-459 bp Feature: domain Description: Phage_XkdX Location: 342 -459 bp Feature: gene Location: 461-949 bp Feature: gene Location: 1162-2358 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1357-2074 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1357-2 074 bp Feature: gene Location: 2383-2718 bp Feature: gene Location: 2705-2920 bp Feature: domain Description: Phage_holin_Dp1 Location: 2714-2900 bp Feature: domain Description: Phage_holin_Dp1 Location: 2 714-2 900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_Dp1 (pfam16938)

Seq: CAAEAO010000584.1 (6985 bp)
Overview 1 RT 1: 3-4437 bp Neighborhood of RT #1 [3, 6965] DEXQc_UvrD DEXQc_UvrD AAA_15 TOPRIM_OLD RVT-UG24 Feature: gene Location: 3-1070 bp Feature: domain Description: DEXQc_UvrD Location: 24-363 bp Feature: domain Description: DEXQc_UvrD Location: 24-3 63 bp Feature: domain Description: DEXQc_UvrD Location: 450-666 bp Feature: domain Description: DEXQc_UvrD Location: 450-666 bp Feature: gene Location: 1055-3190 bp Feature: domain Description: AAA_15 Location: 1058-2309 bp Feature: domain Description: AAA_15 Location: 1058-23 09 bp Feature: domain Description: TOPRIM_OLD Location: 2498-2747 bp Feature: domain Description: TOPRIM_OLD Location: 2498-2747 bp Feature: gene Location: 3387-6965 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 3933-4437 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 3 93 3 -443 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXQc_UvrD (cd17932), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-UG24

Seq: CAAEAO010000180.1 (11208 bp)
Overview 1 RT 1: 9060-10940 bp Neighborhood of RT #1 [9060, 10940] Phage_XkdX RVT-DGRs Feature: gene Location: 9060-9212 bp Feature: domain Description: Phage_XkdX Location: 9081-9192 bp Feature: domain Description: Phage_XkdX Location: 9081-9192 bp Feature: gene Location: 9214-9528 bp Feature: gene Location: 9365-10663 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9629-10256 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9629-10256 bp Feature: gene Location: 10746-10940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs

Seq: CAAEAO010000207.1 (2928 bp)
Overview 1 RT 1: 185-2928 bp Neighborhood of RT #1 [185, 2927] RVT-GII TraC-F-type Feature: gene Location: 185-316 bp Feature: gene Location: 474-674 bp Feature: gene Location: 701-2674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061-1799 bp Feature: gene Location: 2718-2927 bp Feature: domain Description: TraC-F-type Location: 2781-2928 bp Feature: domain Description: TraC-F-type Location: 2781-2928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraC-F-type (TIGR02746)