myRT

myRT report for GCA_900754345.1_ERS396473_14

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Seq: CAAECK010000176.1 (14861 bp)
Overview 1 RT 1: 795-9135 bp Neighborhood of RT #1 [795, 9179] RMtype1_S_TRD-CR_like RMtype1_S_TRD-CR_like COG0610 RVT-AbiA HEPN_AbiA_CTD RadC LGT_LGT_LGT_TIGR03299 Feature: gene Location: 795-1913 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 822-1278 bp Feature: domain Description: RMtype1 _S_TRD-CR_like Location: 822-1 278 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 1422-1842 bp Feature: domain Description: RMtype1 _S_TRD-CR_like Location: 1 422-1 842 bp Feature: gene Location: 1917-5288 bp Feature: domain Description: COG0610 Location: 1956-4956 bp Feature: domain Description: COG061 0 Location: 1 956-4956 bp Feature: gene Location: 5356-7221 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 5704-6229 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 5704-6229 bp Feature: domain Description: HEPN_AbiA_CTD Location: 6826-7219 bp Feature: domain Description: HEPN_AbiA_CTD Location: 6826-721 9 bp Feature: gene Location: 7705-8214 bp Feature: domain Description: RadC Location: 7822-8164 bp Feature: domain Description: RadC Location: 7822-81 64 bp Feature: gene Location: 8241-9179 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 8265-9135 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 8265-91 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_TRD-CR_like (cl38903), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), RadC (pfam04002), LGT_LGT_LGT_TIGR03299

Seq: CAAECK010000047.1 (91213 bp)
Overview 1 RT 1: 35758-42510 bp Neighborhood of RT #1 [35758, 42530] VirB4_CagE VirB4_CagE RVT-GII Intron_maturas2 Spr Feature: gene Location: 35758-37884 bp Feature: domain Description: VirB4_CagE Location: 35824-36145 bp Feature: domain Description: VirB4_CagE Location: 3582 4-36145 bp Feature: domain Description: VirB4_CagE Location: 36511-37846 bp Feature: domain Description: VirB4_CagE Location: 36511-37846 bp Feature: gene Location: 38131-38289 bp Feature: gene Location: 38379-40169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38646-39459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38646-39459 bp Feature: domain Description: Intron_maturas2 Location: 39549-39843 bp Feature: domain Description: Intron_maturas2 Location: 39549-39843 bp Feature: gene Location: 40175-40558 bp Feature: gene Location: 40494-42530 bp Feature: domain Description: Spr Location: 42168-42510 bp Feature: domain Description: Spr Location: 42 168-42 510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), RVT-GII, Intron_maturas2 (pfam01348), Spr (COG0791)

Seq: CAAECK010000120.1 (13831 bp)
Overview 1 RT 1: 2-8792 bp Neighborhood of RT #1 [2, 8809] PRK05590 RVT-GII GIIM RVT_N RVT-GII RVT-GII rSAM_nif11 Feature: gene Location: 2-910 bp Feature: domain Description: PRK05590 Location: 824-905 bp Feature: domain Description: PRK05590 Location: 824-905 bp Feature: gene Location: 1637-2629 bp Feature: gene Location: 3225-4616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3540-4164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 540-4164 bp Feature: domain Description: GIIM Note: maturase Location: 4221-4437 bp Feature: domain Description: GIIM Note: maturase Location: 4221-443 7 bp Feature: gene Location: 4698-4835 bp Feature: gene Location: 4974-5135 bp Feature: gene Location: 5603-6163 bp Feature: domain Description: RVT_N Location: 5621-5861 bp Feature: domain Description: RVT_N Location: 5621-5861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5924-6158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5924-6158 bp Feature: gene Location: 6178-6444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6184-6412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6184-6412 bp Feature: gene Location: 7180-7320 bp Feature: gene Location: 7454-8809 bp Feature: domain Description: rSAM_nif11 Location: 7499-8792 bp Feature: domain Description: rSAM_nif11 Location: 7499-8792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05590 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), rSAM_nif11 (TIGR04064)