myRT

myRT report for GCA_900755165.1_ERS473049_12

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Seq: CAAEFM010000276.1 (35510 bp)
Overview 1 RT 1: 27291-35424 bp Neighborhood of RT #1 [27291, 35471] DUF3801 VirD4 RVT-GII INT_RitA_C_like INT_RitB_C_like xerS INT_RitC_C_like RVT-GII VirD4 Feature: gene Location: 27291-28484 bp Feature: domain Description: DUF3801 Location: 27417-28398 bp Feature: domain Description: DUF3801 Location: 2741 7-28398 bp Feature: gene Location: 28484-29053 bp Feature: domain Description: VirD4 Location: 28643-28994 bp Feature: domain Description: VirD4 Location: 28643-28994 bp Feature: gene Location: 29792-30289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30050-30275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30050-30275 bp Feature: gene Location: 30438-31634 bp Feature: domain Description: INT_RitA_C_like Location: 31086-31608 bp Feature: domain Description: INT_RitA_C_like Location: 31 086-31 608 bp Feature: gene Location: 31627-32664 bp Feature: domain Description: INT_RitB_C_like Location: 31990-32590 bp Feature: domain Description: INT_RitB_C_like Location: 31 990-32590 bp Feature: gene Location: 32657-33670 bp Feature: domain Description: xerS Location: 32690-32885 bp Feature: domain Description: xerS Location: 32690-32885 bp Feature: domain Description: INT_RitC_C_like Location: 33032-33569 bp Feature: domain Description: INT_RitC_C_like Location: 33032-33569 bp Feature: gene Location: 33776-35110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33785-34280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33785-34280 bp Feature: gene Location: 35292-35471 bp Feature: domain Description: VirD4 Location: 35298-35424 bp Feature: domain Description: VirD4 Location: 35298-35424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEFM010000097.1 (65953 bp)
Overview 1 RT 1: 1349-5739 bp Neighborhood of RT #1 [1349, 6455] UgpA UgpE RVT-GII Beta_helix Beta_helix Feature: gene Location: 1349-2242 bp Feature: domain Description: UgpA Location: 1373-2228 bp Feature: domain Description: UgpA Location: 1373-2 2 2 8 bp Feature: gene Location: 2232-3110 bp Feature: domain Description: UgpE Location: 2298-3105 bp Feature: domain Description: UgpE Location: 2 2 98-3105 bp Feature: gene Location: 3277-3765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3280-3640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 80-3640 bp Feature: gene Location: 3827-3973 bp Feature: gene Location: 4086-6455 bp Feature: domain Description: Beta_helix Location: 4815-5139 bp Feature: domain Description: Beta_helix Location: 4815-5139 bp Feature: domain Description: Beta_helix Location: 5310-5739 bp Feature: domain Description: Beta_helix Location: 5310-5739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEFM010000268.1 (57390 bp)
Overview 1 RT 1: 59-3935 bp Neighborhood of RT #1 [59, 4207] RVT-GII GIIM PRK10658 Feature: gene Location: 59-1450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 74-998 bp Feature: domain Description: GIIM Note: maturase Location: 1055-1274 bp Feature: domain Description: GIIM Note: maturase Location: 1055-1274 bp Feature: gene Location: 1522-1761 bp Feature: gene Location: 1934-4207 bp Feature: domain Description: PRK10658 Location: 1937-3935 bp Feature: domain Description: PRK10658 Location: 193 7-3 93 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEFM010000245.1 (80274 bp)
Overview 1 RT 1: 13315-19514 bp Neighborhood of RT #1 [13315, 19534] PRK14508 PlsC RVT-Retrons FtsX FtsX Feature: gene Location: 13315-14835 bp Feature: domain Description: PRK14508 Location: 13345-14830 bp Feature: domain Description: PRK14 508 Location: 1334 5-14 830 bp Feature: gene Location: 14925-15668 bp Feature: domain Description: PlsC Location: 14973-15651 bp Feature: domain Description: PlsC Location: 14 973-15651 bp Feature: gene Location: 15763-16761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15928-16483 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15928-164 83 bp Feature: gene Location: 16884-17150 bp Feature: gene Location: 17171-19534 bp Feature: domain Description: FtsX Location: 18056-18305 bp Feature: domain Description: FtsX Location: 18056-18305 bp Feature: domain Description: FtsX Location: 19229-19514 bp Feature: domain Description: FtsX Location: 19229-19514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEFM010000328.1 (27350 bp)
Overview 1 RT 1: 7331-13086 bp Neighborhood of RT #1 [7331, 13124] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII VirD4 VirD4 Feature: gene Location: 7331-9202 bp Feature: domain Description: SR_TndX_transposase Location: 7355-7763 bp Feature: domain Description: SR_TndX_transposase Location: 735 5 -7763 bp Feature: domain Description: Recombinase Location: 7862-8225 bp Feature: domain Description: Recombinase Location: 7862-8225 bp Feature: domain Description: Zn_ribbon_recom Location: 8267-8450 bp Feature: domain Description: Zn_ribbon_recom Location: 8267-845 0 bp Feature: domain Description: DUF4368 Location: 8735-8921 bp Feature: domain Description: DUF4368 Location: 8735 -8921 bp Feature: gene Location: 9275-9508 bp Feature: gene Location: 9652-11559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9982-10726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9982-10726 bp Feature: gene Location: 11582-11827 bp Feature: gene Location: 12219-13124 bp Feature: domain Description: VirD4 Location: 12492-12840 bp Feature: domain Description: VirD4 Location: 12492-12840 bp Feature: domain Description: VirD4 Location: 12930-13086 bp Feature: domain Description: VirD4 Location: 12930-13086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEFM010000283.1 (62112 bp)
Overview 1 RT 1: 49100-51640 bp Neighborhood of RT #1 [49100, 51640] HTH_XRE RVT-GII GIIM Feature: gene Location: 49100-49471 bp Feature: domain Description: HTH_XRE Location: 49130-49289 bp Feature: domain Description: HTH_XRE Location: 49130-49289 bp Feature: gene Location: 49554-49760 bp Feature: gene Location: 49843-51147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50044-50662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50044-506 6 2 bp Feature: domain Description: GIIM Note: maturase Location: 50716-50926 bp Feature: domain Description: GIIM Note: maturase Location: 50716 -50926 bp Feature: gene Location: 51179-51337 bp Feature: gene Location: 51503-51640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEFM010000005.1 (28136 bp)
Overview 1 RT 1: 541-5200 bp Neighborhood of RT #1 [541, 5205] RVT_N RVT-GII GIIM HTH_TipAL-Mta Sms Feature: gene Location: 541-2436 bp Feature: domain Description: RVT_N Location: 811-1048 bp Feature: domain Description: RVT_N Location: 811-1048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-17 44 bp Feature: domain Description: GIIM Note: maturase Location: 1801-2032 bp Feature: domain Description: GIIM Note: maturase Location: 1801-2032 bp Feature: gene Location: 2787-3557 bp Feature: domain Description: HTH_TipAL-Mta Location: 2817-3117 bp Feature: domain Description: HTH_TipAL-Mta Location: 2817 -3117 bp Feature: gene Location: 3769-5205 bp Feature: domain Description: Sms Location: 3850-5200 bp Feature: domain Description: Sms Location: 3850-5200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT