myRT

myRT report for GCA_900755815.1_ERS473264_6

Download annotations/find similar RTs

Seq: CAAEHV010000001.1 (151719 bp)
Overview 1 RT 1: 27844-31223 bp Neighborhood of RT #1 [27844, 31223] RVT-DGRs Feature: gene Location: 27844-28428 bp Feature: gene Location: 28376-28606 bp Feature: gene Location: 28572-29387 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28905-29229 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28905-29229 bp Feature: gene Location: 29671-29874 bp Feature: gene Location: 29904-31223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAEHV010000006.1 (15496 bp)
Overview 1 RT 1: 300-4725 bp Neighborhood of RT #1 [300, 5066] Avd_like DUF1566 RVT-DGRs MutS_I TMAO_torS Feature: gene Location: 300-689 bp Feature: domain Description: Avd_like Location: 342-648 bp Feature: domain Description: Avd_like Location: 342 -648 bp Feature: gene Location: 754-960 bp Feature: domain Description: DUF1566 Location: 796-931 bp Feature: domain Description: DUF1566 Location: 796-931 bp Feature: gene Location: 1125-2240 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1206-1896 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 06-1896 bp Feature: gene Location: 2237-2713 bp Feature: domain Description: MutS_I Location: 2288-2483 bp Feature: domain Description: MutS_I Location: 2 2 88-2 483 bp Feature: gene Location: 2715-5066 bp Feature: domain Description: TMAO_torS Location: 3633-4725 bp Feature: domain Description: TMAO_torS Location: 3633-472 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs, MutS_I (pfam01624), TMAO_torS (TIGR02956)

Seq: CAAEHV010000003.1 (384998 bp)
Overview 1 RT 1: 342714-347481 bp Neighborhood of RT #1 [342714, 347621] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 342714-342920 bp Feature: gene Location: 343690-343980 bp Feature: domain Description: Cas2_I_II_III Location: 343717-343927 bp Feature: domain Description: Cas2_I_II_III Location: 3 43 717-3 43 927 bp Feature: gene Location: 343974-346244 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 344181-344787 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 44181-3 44787 bp Feature: domain Description: Cas1_I-II-III Location: 345246-346203 bp Feature: domain Description: Cas1_I-II-III Location: 3 45246-3 46203 bp Feature: gene Location: 346264-347208 bp Feature: domain Description: Cmr6_III-B Location: 346420-347197 bp Feature: domain Description: Cmr6_III-B Location: 3 46420-3 47197 bp Feature: gene Location: 347211-347621 bp Feature: domain Description: Cas_Cmr5 Location: 347259-347481 bp Feature: domain Description: Cas_Cmr5 Location: 3 47259-3 47481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: CAAEHV010000011.1 (134176 bp)
Overview 1 RT 1: 1-9123 bp Neighborhood of RT #1 [1, 9128] Laminin_G_3 Laminin_G_3 CotH RVT-DGRs ArgoMid ArgoMid Feature: gene Location: 1-6405 bp Feature: domain Description: Laminin_G_3 Location: 1120-1213 bp Feature: domain Description: Laminin_G_3 Location: 1120-1213 bp Feature: domain Description: Laminin_G_3 Location: 1864-2284 bp Feature: domain Description: Laminin_G_3 Location: 1864 -2284 bp Feature: domain Description: CotH Location: 3250-3592 bp Feature: domain Description: CotH Location: 3250-3592 bp Feature: gene Location: 6654-6824 bp Feature: gene Location: 6903-8225 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7134-7728 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7134 -7728 bp Feature: gene Location: 8222-8707 bp Feature: gene Location: 8886-9128 bp Feature: domain Description: ArgoMid Location: 8901-9009 bp Feature: domain Description: ArgoMid Location: 8901-9009 bp Feature: domain Description: ArgoMid Location: 9024-9123 bp Feature: domain Description: ArgoMid Location: 9024 -9123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), RVT-DGRs, ArgoMid (pfam16487)

Seq: CAAEHV010000043.1 (19246 bp)
Overview 1 RT 1: 91-5230 bp Neighborhood of RT #1 [91, 5230] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 91-1482 bp Feature: domain Description: Bac_Flav_CT_G Location: 205-1471 bp Feature: domain Description: Bac_Flav_CT_G Location: 205 -1471 bp Feature: gene Location: 1466-3148 bp Feature: domain Description: RVT_N Location: 1529-1772 bp Feature: domain Description: RVT_N Location: 15 29-1772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1817-2465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1817-2465 bp Feature: domain Description: GIIM Note: maturase Location: 2516-2750 bp Feature: domain Description: GIIM Note: maturase Location: 25 16-275 0 bp Feature: gene Location: 3754-4491 bp Feature: domain Description: Bac_Flav_CT_G Location: 3760-4474 bp Feature: domain Description: Bac_Flav_CT_G Location: 3760-4474 bp Feature: gene Location: 4646-5230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAAEHV010000045.1 (26578 bp)
Overview 1 RT 1: 106-2322 bp Neighborhood of RT #1 [106, 2322] RVT-AbiP2 Hypoth_Ymh Feature: gene Location: 106-1164 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 112-526 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 112-526 bp Feature: gene Location: 1189-1983 bp Feature: domain Description: Hypoth_Ymh Location: 1606-1960 bp Feature: domain Description: Hypoth_Ymh Location: 16 06 -196 0 bp Feature: gene Location: 2056-2322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Hypoth_Ymh (pfam09509)