myRT

myRT report for GCA_900755875.1_ERS473266_29

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Seq: CAAEIB010000567.1 (2877 bp)
Overview 1 RT 1: 2-2876 bp Neighborhood of RT #1 [2, 2876] RVT-Retrons Feature: gene Location: 2-241 bp Feature: gene Location: 303-536 bp Feature: gene Location: 710-1840 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1031-1583 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 031 -1 583 bp Feature: gene Location: 2043-2876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CAAEIB010000062.1 (4680 bp)
Overview 1 RT 1: 2-2820 bp Neighborhood of RT #1 [2, 2861] Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 2-571 bp Feature: domain Description: Cmr6_III-B Location: 158-560 bp Feature: domain Description: Cmr6_III-B Location: 158-560 bp Feature: gene Location: 591-2861 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 798-1404 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 798-1404 bp Feature: domain Description: Cas1_I-II-III Location: 1863-2820 bp Feature: domain Description: Cas1_I-II-III Location: 1863-2 82 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: CAAEIB010000203.1 (3190 bp)
Overview 1 RT 1: 3-3187 bp Neighborhood of RT #1 [3, 3189] RVT-GII HNHc PRK13914 Feature: gene Location: 3-332 bp Feature: gene Location: 461-676 bp Feature: gene Location: 985-2943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-2065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 21-2065 bp Feature: domain Description: HNHc Note: nucleases Location: 2644-2785 bp Feature: domain Description: HNHc Note: nucleases Location: 2644-2785 bp Feature: gene Location: 2998-3189 bp Feature: domain Description: PRK13914 Location: 3046-3187 bp Feature: domain Description: PRK13 914 Location: 3 046-3 187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), PRK13914 (invasion associated endopeptidase)

Seq: CAAEIB010000422.1 (2686 bp)
Overview 1 RT 1: 523-1597 bp Neighborhood of RT #1 [523, 2433] RVT-GII Feature: gene Location: 523-2433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 853-1597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 853-1597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAEIB010000737.1 (3004 bp)
Overview 1 RT 1: 1-2725 bp Neighborhood of RT #1 [1, 2725] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-432 bp Feature: domain Description: Bac_Flav_CT_G Location: 31-433 bp Feature: domain Description: Bac_Flav_CT_G Location: 31-433 bp Feature: gene Location: 513-2345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1620 bp Feature: domain Description: Intron_maturas2 Location: 1689-2022 bp Feature: domain Description: Intron_maturas2 Location: 1689-2022 bp Feature: domain Description: HNHc Note: nucleases Location: 2166-2316 bp Feature: domain Description: HNHc Note: nucleases Location: 2166-2316 bp Feature: gene Location: 2537-2725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAEIB010000115.1 (2650 bp)
Overview 1 RT 1: 2-2649 bp Neighborhood of RT #1 [2, 2649] AAA_10 RVT_N RVT-GII GIIM Feature: gene Location: 2-181 bp Feature: domain Description: AAA_10 Location: 20-167 bp Feature: domain Description: AAA_10 Location: 20-16 7 bp Feature: gene Location: 415-588 bp Feature: gene Location: 708-2390 bp Feature: domain Description: RVT_N Location: 786-1029 bp Feature: domain Description: RVT_N Location: 786 -1029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1074-1737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1074-1737 bp Feature: domain Description: GIIM Note: maturase Location: 1788-2025 bp Feature: domain Description: GIIM Note: maturase Location: 1788-2025 bp Feature: gene Location: 2395-2649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)