myRT

myRT report for GCA_900756035.1_ERS473319_7

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Seq: CAAEIR010000157.1 (9476 bp)
Overview 1 RT 1: 527-8682 bp Neighborhood of RT #1 [527, 8682] N6_Mtase COG4646 RVT_N RVT-GII GIIM Feature: gene Location: 527-1405 bp Feature: domain Description: N6_Mtase Location: 611-1172 bp Feature: domain Description: N6_Mtase Location: 61 1 -1 1 72 bp Feature: gene Location: 1402-4125 bp Feature: domain Description: COG4646 Location: 1510-3751 bp Feature: domain Description: COG4646 Location: 1 51 0-3751 bp Feature: gene Location: 4703-6358 bp Feature: domain Description: RVT_N Location: 4772-5015 bp Feature: domain Description: RVT_N Location: 4772-501 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5060-5708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5060-5708 bp Feature: domain Description: GIIM Note: maturase Location: 5759-5993 bp Feature: domain Description: GIIM Note: maturase Location: 5759-5993 bp Feature: gene Location: 6396-7322 bp Feature: gene Location: 7756-8682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEIR010000235.1 (12981 bp)
Overview 1 RT 1: 7979-12369 bp Neighborhood of RT #1 [7979, 12404] Virulence_RhuM Virulence_RhuM RVT-Retrons COG3943 Feature: gene Location: 7979-8374 bp Feature: domain Description: Virulence_RhuM Location: 8054-8345 bp Feature: domain Description: Virulence_RhuM Location: 8054-8345 bp Feature: gene Location: 8274-8882 bp Feature: domain Description: Virulence_RhuM Location: 8334-8814 bp Feature: domain Description: Virulence_RhuM Location: 8334-8814 bp Feature: gene Location: 9307-11289 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10447-11011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10447-11011 bp Feature: gene Location: 11382-12404 bp Feature: domain Description: COG3943 Location: 11400-12369 bp Feature: domain Description: COG3943 Location: 11400-12 369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEIR010000177.1 (5309 bp)
Overview 1 RT 1: 708-4511 bp Neighborhood of RT #1 [708, 4558] RVT-GII COG4584 IstB_IS21 Feature: gene Location: 708-875 bp Feature: gene Location: 1014-1160 bp Feature: gene Location: 1232-2149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1433-2051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 3 -2051 bp Feature: gene Location: 2239-3660 bp Feature: domain Description: COG4584 Location: 2350-3106 bp Feature: domain Description: COG4584 Location: 23 50-3 106 bp Feature: gene Location: 3794-4558 bp Feature: domain Description: IstB_IS21 Location: 3983-4511 bp Feature: domain Description: IstB_IS21 Location: 3 983 -4511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEIR010000080.1 (1077 bp)
Overview 1 RT 1: 2-920 bp Neighborhood of RT #1 [2, 1075] RVT-GII Feature: gene Location: 2-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86-920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86-920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEIR010000073.1 (5232 bp)
Overview 1 RT 1: 2299-4696 bp Neighborhood of RT #1 [2299, 5061] VirB4_CagE RVT-GII GIIM Feature: gene Location: 2299-3078 bp Feature: gene Location: 3093-4151 bp Feature: domain Description: VirB4_CagE Location: 3261-4026 bp Feature: domain Description: VirB4_CagE Location: 3261-4026 bp Feature: gene Location: 4078-5061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4207-4408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4207-4408 bp Feature: domain Description: GIIM Note: maturase Location: 4459-4696 bp Feature: domain Description: GIIM Note: maturase Location: 445 9-4696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEIR010000260.1 (47647 bp)
Overview 1 RT 1: 652-3914 bp Neighborhood of RT #1 [652, 3914] RVT-GII GIIM Feature: gene Location: 652-801 bp Feature: gene Location: 1392-1547 bp Feature: gene Location: 1567-2979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1918-2539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1918-2539 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2818 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2818 bp Feature: gene Location: 3210-3353 bp Feature: gene Location: 3360-3914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEIR010000249.1 (17973 bp)
Overview 1 RT 1: 11-6571 bp Neighborhood of RT #1 [11, 6588] YodL LPD16 DUF4316 LPD25 RVT-GII RVT-GII RVT-GII GIIM CcmA Feature: gene Location: 11-1006 bp Feature: gene Location: 1083-3839 bp Feature: domain Description: YodL Location: 1863-2157 bp Feature: domain Description: YodL Location: 1863-2157 bp Feature: domain Description: LPD16 Location: 2187-2409 bp Feature: domain Description: LPD16 Location: 2187 -2409 bp Feature: domain Description: DUF4316 Location: 2457-2541 bp Feature: domain Description: DUF4316 Location: 2457 -2541 bp Feature: domain Description: LPD25 Location: 3150-3441 bp Feature: domain Description: LPD25 Location: 3150-3441 bp Feature: gene Location: 4039-4302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4240-4300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4240-4300 bp Feature: gene Location: 4411-4686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4417-4624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4417 -4624 bp Feature: gene Location: 4711-5358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4714-4990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47 14-4990 bp Feature: domain Description: GIIM Note: maturase Location: 5071-5275 bp Feature: domain Description: GIIM Note: maturase Location: 507 1-527 5 bp Feature: gene Location: 5422-5616 bp Feature: gene Location: 5662-6588 bp Feature: domain Description: CcmA Location: 5677-6571 bp Feature: domain Description: CcmA Location: 567 7 -657 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT