myRT

myRT report for GCA_900756185.1_ERS473366_23

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Seq: CAAEJD010000117.1 (5016 bp)
Overview 1 RT 1: 3-4639 bp Neighborhood of RT #1 [3, 4639] TraG-D_C RVT-GII GIIM COG2865 Feature: gene Location: 3-638 bp Feature: domain Description: TraG-D_C Location: 18-351 bp Feature: domain Description: TraG-D_C Location: 1 8-351 bp Feature: gene Location: 1104-2510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1446-2064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 446-2064 bp Feature: domain Description: GIIM Note: maturase Location: 2118-2322 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 8-2322 bp Feature: gene Location: 2604-4034 bp Feature: domain Description: COG2865 Location: 2607-3903 bp Feature: domain Description: COG2865 Location: 2607-3903 bp Feature: gene Location: 4031-4639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJD010000113.1 (49823 bp)
Overview 1 RT 1: 2-10332 bp Neighborhood of RT #1 [2, 10332] DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 2-175 bp Feature: gene Location: 344-6172 bp Feature: domain Description: DUF4011 Location: 1499-2012 bp Feature: domain Description: DUF4011 Location: 1499-2 012 bp Feature: domain Description: DEXXQc_SF1 Location: 2351-2951 bp Feature: domain Description: DEXXQc_SF1 Location: 2 351-2 951 bp Feature: domain Description: DEXXQc_SF1 Location: 3788-4538 bp Feature: domain Description: DEXXQc_SF1 Location: 3788-4538 bp Feature: domain Description: TIGR00376 Location: 4670-5060 bp Feature: domain Description: TIGR00376 Location: 4670-5060 bp Feature: domain Description: MTES_1575 Location: 5210-5498 bp Feature: domain Description: MTES_1575 Location: 52 10-5498 bp Feature: domain Description: DUF3320 Location: 5678-5822 bp Feature: domain Description: DUF332 0 Location: 5678-582 2 bp Feature: gene Location: 6206-7339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6530-7082 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6530-7082 bp Feature: gene Location: 7544-9730 bp Feature: gene Location: 10132-10332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJD010000048.1 (16516 bp)
Overview 1 RT 1: 8272-16165 bp Neighborhood of RT #1 [8272, 16515] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 Feature: gene Location: 8272-9504 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8299-8554 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8299-8554 bp Feature: domain Description: Phage_int_SAM_5 Location: 8596-8905 bp Feature: domain Description: Phage_int_SAM_5 Location: 8596-8905 bp Feature: domain Description: INTN1_C_like Location: 8953-9433 bp Feature: domain Description: INTN1_C_like Location: 8953 -943 3 bp Feature: gene Location: 9519-9731 bp Feature: gene Location: 10038-11168 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10359-10902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103 59-10902 bp Feature: gene Location: 11170-16515 bp Feature: domain Description: DUF4011 Location: 11788-12301 bp Feature: domain Description: DUF4011 Location: 11788-123 01 bp Feature: domain Description: DEXXQc_SF1 Location: 12640-13501 bp Feature: domain Description: DEXXQc_SF1 Location: 12640-13 501 bp Feature: domain Description: DEXXQc_SF1 Location: 14068-14827 bp Feature: domain Description: DEXXQc_SF1 Location: 14068-14827 bp Feature: domain Description: TIGR00376 Location: 14959-15346 bp Feature: domain Description: TIGR003 76 Location: 14959-153 46 bp Feature: domain Description: MTES_1575 Location: 15499-15784 bp Feature: domain Description: MTES_1575 Location: 15499-15784 bp Feature: domain Description: DUF3320 Location: 16024-16165 bp Feature: domain Description: DUF3 3 20 Location: 16024-16165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJD010000074.1 (1273 bp)
Overview 1 RT 1: 2-1040 bp Neighborhood of RT #1 [2, 1231] RVT-GII GIIM Feature: gene Location: 2-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155-779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155-779 bp Feature: domain Description: GIIM Note: maturase Location: 836-1040 bp Feature: domain Description: GIIM Note: maturase Location: 836-104 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJD010000003.1 (3159 bp)
Overview 1 RT 1: 2-2912 bp Neighborhood of RT #1 [2, 2912] VirB4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-649 bp Feature: domain Description: VirB4 Location: 38-629 bp Feature: domain Description: VirB4 Location: 38-629 bp Feature: gene Location: 798-2594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1071-1881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1071-1881 bp Feature: domain Description: Intron_maturas2 Location: 1968-2241 bp Feature: domain Description: Intron_maturas2 Location: 1968-2241 bp Feature: domain Description: HNHc Note: nucleases Location: 2421-2574 bp Feature: domain Description: HNHc Note: nucleases Location: 2421-25 74 bp Feature: gene Location: 2721-2912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJD010000155.1 (2916 bp)
Overview 1 RT 1: 2-2820 bp Neighborhood of RT #1 [2, 2820] RVT-GII Feature: gene Location: 2-214 bp Feature: gene Location: 252-2120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564-1308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56 4-1308 bp Feature: gene Location: 2177-2437 bp Feature: gene Location: 2581-2820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJD010000096.1 (20849 bp)
Overview 1 RT 1: 135-3124 bp Neighborhood of RT #1 [135, 3150] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 135-410 bp Feature: gene Location: 376-1797 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 748-1453 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7 48-1453 bp Feature: gene Location: 1812-2192 bp Feature: domain Description: Avd_like Location: 1839-2145 bp Feature: domain Description: Avd_like Location: 1839-2145 bp Feature: gene Location: 2338-3150 bp Feature: domain Description: DUF1566 Location: 2869-3124 bp Feature: domain Description: DUF1566 Location: 2869-3124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT