myRT

myRT report for GCA_900756305.1_ERS473394_44

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Seq: CAAEJN010000146.1 (3206 bp)
Overview 1 RT 1: 1100-3176 bp Neighborhood of RT #1 [1100, 3205] DUF4366 DUF4315 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1100-1783 bp Feature: domain Description: DUF4366 Location: 1262-1652 bp Feature: domain Description: DUF4366 Location: 1 262-1 652 bp Feature: gene Location: 1773-2030 bp Feature: domain Description: DUF4315 Location: 1785-2022 bp Feature: domain Description: DUF431 5 Location: 1 785-2022 bp Feature: gene Location: 2276-3205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294-2486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294-2486 bp Feature: domain Description: Intron_maturas2 Location: 2555-2834 bp Feature: domain Description: Intron_maturas2 Location: 2555-2834 bp Feature: domain Description: HNHc Note: nucleases Location: 3023-3176 bp Feature: domain Description: HNHc Note: nucleases Location: 3023-31 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000009.1 (5439 bp)
Overview 1 RT 1: 3-2972 bp Neighborhood of RT #1 [3, 2972] RVT_N RVT-GII YkfC Feature: gene Location: 3-1457 bp Feature: domain Description: RVT_N Location: 9-84 bp Feature: domain Description: RVT_N Location: 9-84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132-780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 -780 bp Feature: domain Description: YkfC Location: 990-1080 bp Feature: domain Description: YkfC Location: 990-1080 bp Feature: gene Location: 1411-2724 bp Feature: gene Location: 2811-2972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000398.1 (4485 bp)
Overview 1 RT 1: 862-4480 bp Neighborhood of RT #1 [862, 4482] Relaxase YWFCY RVT_N RVT-GII Feature: gene Location: 862-2109 bp Feature: domain Description: Relaxase Location: 985-1645 bp Feature: domain Description: Relaxase Location: 985-1645 bp Feature: gene Location: 2146-3069 bp Feature: domain Description: YWFCY Location: 2152-2329 bp Feature: domain Description: YWFCY Location: 2152-23 29 bp Feature: gene Location: 3706-4482 bp Feature: domain Description: RVT_N Location: 3760-4003 bp Feature: domain Description: RVT_N Location: 3 760-4003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4048-4480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4048-4480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000111.1 (4097 bp)
Overview 1 RT 1: 314-4096 bp Neighborhood of RT #1 [314, 4095] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 314-541 bp Feature: domain Description: DUF4141 Location: 329-482 bp Feature: domain Description: DUF4 14 1 Location: 329-4 82 bp Feature: gene Location: 581-742 bp Feature: gene Location: 1062-2897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356-2178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356-2178 bp Feature: domain Description: Intron_maturas2 Location: 2337-2706 bp Feature: domain Description: Intron_maturas2 Location: 2337-2706 bp Feature: domain Description: HNHc Note: nucleases Location: 2730-2871 bp Feature: domain Description: HNHc Note: nucleases Location: 2730-2871 bp Feature: gene Location: 2890-3426 bp Feature: gene Location: 3430-4095 bp Feature: domain Description: Bac_Flav_CT_J Location: 3436-4096 bp Feature: domain Description: Bac_Flav_CT_J Location: 34 36-4 096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000126.1 (3454 bp)
Overview 1 RT 1: 210-3338 bp Neighborhood of RT #1 [210, 3451] RVT-GII HNHc T4SS-DNA_transf Feature: gene Location: 210-2114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525-1257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 25 -125 7 bp Feature: domain Description: HNHc Note: nucleases Location: 1836-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1836-2004 bp Feature: gene Location: 2193-2465 bp Feature: gene Location: 2771-3451 bp Feature: domain Description: T4SS-DNA_transf Location: 2774-3338 bp Feature: domain Description: T4SS-DNA_transf Location: 2774-3338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000202.1 (11458 bp)
Overview 1 RT 1: 260-4685 bp Neighborhood of RT #1 [260, 5026] Avd_like DUF1566 RVT-DGRs MutS_I TMAO_torS Feature: gene Location: 260-649 bp Feature: domain Description: Avd_like Location: 302-608 bp Feature: domain Description: Avd_like Location: 302-6 08 bp Feature: gene Location: 714-920 bp Feature: domain Description: DUF1566 Location: 756-891 bp Feature: domain Description: DUF156 6 Location: 756 -891 bp Feature: gene Location: 1085-2200 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1166-1856 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 116 6 -1856 bp Feature: gene Location: 2197-2673 bp Feature: domain Description: MutS_I Location: 2248-2443 bp Feature: domain Description: MutS_I Location: 2248-2443 bp Feature: gene Location: 2675-5026 bp Feature: domain Description: TMAO_torS Location: 3593-4685 bp Feature: domain Description: TMAO_torS Location: 3593-46 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000377.1 (2749 bp)
Overview 1 RT 1: 705-1779 bp Neighborhood of RT #1 [705, 2615] RVT-GII Feature: gene Location: 705-2615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1035-1779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1035-17 7 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000487.1 (4376 bp)
Overview 1 RT 1: 333-4356 bp Neighborhood of RT #1 [333, 4373] HTH_17 COG3943 RVT-GII Intron_maturas2 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 333-638 bp Feature: domain Description: HTH_17 Location: 471-600 bp Feature: domain Description: HTH_17 Location: 471-600 bp Feature: gene Location: 716-1078 bp Feature: domain Description: COG3943 Location: 755-1004 bp Feature: domain Description: COG3943 Location: 755-1004 bp Feature: gene Location: 1292-3100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1556-2378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1556-2378 bp Feature: domain Description: Intron_maturas2 Location: 2504-2759 bp Feature: domain Description: Intron_maturas2 Location: 2504-2759 bp Feature: gene Location: 3651-4373 bp Feature: domain Description: Phage_int_SAM_5 Location: 3666-3849 bp Feature: domain Description: Phage_int_SAM_5 Location: 3666-38 49 bp Feature: domain Description: INTN1_C_like Location: 3888-4356 bp Feature: domain Description: INTN1_C_like Location: 38 8 8 -4356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000071.1 (4124 bp)
Overview 1 RT 1: 1-3696 bp Neighborhood of RT #1 [1, 3719] T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc VirD4 Feature: gene Location: 1-513 bp Feature: domain Description: T4SS-DNA_transf Location: 58-499 bp Feature: domain Description: T4SS-DNA_transf Location: 58-49 9 bp Feature: gene Location: 585-2375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-1668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-1668 bp Feature: domain Description: Intron_maturas2 Location: 1842-2037 bp Feature: domain Description: Intron_maturas2 Location: 1842-2037 bp Feature: domain Description: HNHc Note: nucleases Location: 2211-2355 bp Feature: domain Description: HNHc Note: nucleases Location: 2211-2355 bp Feature: gene Location: 2363-2623 bp Feature: gene Location: 3003-3719 bp Feature: domain Description: VirD4 Location: 3249-3696 bp Feature: domain Description: VirD4 Location: 3249 -369 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000432.1 (2990 bp)
Overview 1 RT 1: 425-1602 bp Neighborhood of RT #1 [425, 1602] RVT-GII HTH_28 Feature: gene Location: 425-634 bp Feature: gene Location: 664-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667-859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667-859 bp Feature: gene Location: 982-1272 bp Feature: domain Description: HTH_28 Location: 1006-1150 bp Feature: domain Description: HTH_28 Location: 10 06-1150 bp Feature: gene Location: 1450-1602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000367.1 (3036 bp)
Overview 1 RT 1: 781-3033 bp Neighborhood of RT #1 [781, 3033] RVT-GII HNHc Feature: gene Location: 781-2754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11 17-1855 bp Feature: domain Description: HNHc Note: nucleases Location: 2410-2548 bp Feature: domain Description: HNHc Note: nucleases Location: 2410-2548 bp Feature: gene Location: 2818-3033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAEJN010000311.1 (2667 bp)
Overview 1 RT 1: 72-2666 bp Neighborhood of RT #1 [72, 2666] RVT-DGRs Feature: gene Location: 72-458 bp Feature: gene Location: 455-1756 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 668-1262 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 668-12 62 bp Feature: gene Location: 2139-2372 bp Feature: gene Location: 2511-2666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT