myRT

myRT report for GCA_900757095.1_ERS537270_10

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Seq: CAAEMO010000733.1 (5504 bp)
Overview 1 RT 1: 583-5276 bp Neighborhood of RT #1 [583, 5503] Phage_H_T_join major_cap_HK97 RVT-GII Intron_maturas2 major_cap_HK97 S14_ClpP_1 Feature: gene Location: 583-936 bp Feature: domain Description: Phage_H_T_join Location: 604-892 bp Feature: domain Description: Phage_H_T_join Location: 604-892 bp Feature: gene Location: 1213-2004 bp Feature: domain Description: major_cap_HK97 Location: 1216-1990 bp Feature: domain Description: major_cap_HK97 Location: 1 21 6-1 990 bp Feature: gene Location: 2131-3924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2398-3208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2398-3208 bp Feature: domain Description: Intron_maturas2 Location: 3277-3580 bp Feature: domain Description: Intron_maturas2 Location: 3277-3580 bp Feature: gene Location: 4463-4870 bp Feature: domain Description: major_cap_HK97 Location: 4481-4865 bp Feature: domain Description: major_cap_HK97 Location: 4481 -4865 bp Feature: gene Location: 4886-5503 bp Feature: domain Description: S14_ClpP_1 Location: 4895-5276 bp Feature: domain Description: S1 4_ClpP_1 Location: 4895-5276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_H_T_join (pfam05521), major_cap_HK97 (TIGR01554), RVT-GII, Intron_maturas2 (pfam01348), S14_ClpP_1 (cd07016)

Seq: CAAEMO010000574.1 (5784 bp)
Overview 1 RT 1: 3490-5782 bp Neighborhood of RT #1 [3490, 5782] HTH_XRE RVT-Retrons Feature: gene Location: 3490-3666 bp Feature: gene Location: 3755-4048 bp Feature: domain Description: HTH_XRE Location: 3764-3929 bp Feature: domain Description: HTH_XRE Location: 3764-392 9 bp Feature: gene Location: 4117-4983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4201-4747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 01-4747 bp Feature: gene Location: 5083-5277 bp Feature: gene Location: 5270-5782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: CAAEMO010000559.1 (22094 bp)
Overview 1 RT 1: 13951-21848 bp Neighborhood of RT #1 [13951, 21988] TIGR02687 Lon_rel_chp RVT-UG5 nitrilase Feature: gene Location: 13951-16548 bp Feature: domain Description: TIGR02687 Location: 14011-16507 bp Feature: domain Description: TIGR02687 Location: 14011-16507 bp Feature: gene Location: 16569-18686 bp Feature: domain Description: Lon_rel_chp Location: 16605-18681 bp Feature: domain Description: Lon_rel_chp Location: 16605-18681 bp Feature: gene Location: 18833-21988 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 19331-19799 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 193 3 1-19799 bp Feature: domain Description: nitrilase Location: 21104-21848 bp Feature: domain Description: nitrilase Location: 21104-21848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02687 (TIGR02687 family protein), Lon_rel_chp (TIGR02653), RVT-UG5, nitrilase (cl11424)

Seq: CAAEMO010000632.1 (9452 bp)
Overview 1 RT 1: 1269-4288 bp Neighborhood of RT #1 [1269, 4350] RVT-DGRs Avd_like Feature: gene Location: 1269-1589 bp Feature: gene Location: 1625-2179 bp Feature: gene Location: 2321-3541 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2528-3188 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2528-3188 bp Feature: gene Location: 3649-3882 bp Feature: gene Location: 3919-4350 bp Feature: domain Description: Avd_like Location: 3979-4288 bp Feature: domain Description: Avd_like Location: 3979-4 288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: CAAEMO010000505.1 (20323 bp)
Overview 1 RT 1: 3231-7847 bp Neighborhood of RT #1 [3231, 7900] RES RVT-UG14 YodL LPD18 DUF4316 TTRAP Feature: gene Location: 3231-3437 bp Feature: gene Location: 3833-4996 bp Feature: domain Description: RES Location: 4085-4448 bp Feature: domain Description: RES Location: 4085 -4448 bp Feature: gene Location: 5053-6600 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 5404-5758 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 5 404-5 75 8 bp Feature: gene Location: 6732-7652 bp Feature: domain Description: YodL Location: 6747-7044 bp Feature: domain Description: YodL Location: 6747-7044 bp Feature: domain Description: LPD18 Location: 7065-7317 bp Feature: domain Description: LPD18 Location: 7065 -7317 bp Feature: domain Description: DUF4316 Location: 7434-7563 bp Feature: domain Description: DUF4316 Location: 7434-75 63 bp Feature: gene Location: 7649-7900 bp Feature: domain Description: TTRAP Location: 7673-7847 bp Feature: domain Description: TTRAP Location: 7673-7847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RES (smart00953), RVT-UG14, YodL (pfam14191), LPD18 (pfam18832), DUF4316 (pfam14195), TTRAP (pfam14203)