myRT

myRT report for GCA_900758315.1_ERS608503_14

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Seq: CAAERF010000598.1 (2476 bp)
Overview 1 RT 1: 350-2114 bp Neighborhood of RT #1 [350, 2227] RVT-GII HNHc Feature: gene Location: 350-2227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1 41 5 bp Feature: domain Description: HNHc Note: nucleases Location: 1952-2114 bp Feature: domain Description: HNHc Note: nucleases Location: 1 952-21 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: CAAERF010000543.1 (14940 bp)
Overview 1 RT 1: 5874-14812 bp Neighborhood of RT #1 [5874, 14812] COG0610 RVT-UG5 nitrilase YhcG YhcG_C Feature: gene Location: 5874-7115 bp Feature: gene Location: 7136-10204 bp Feature: domain Description: COG0610 Location: 7151-10109 bp Feature: domain Description: COG0610 Location: 7151-10109 bp Feature: gene Location: 10223-13351 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10733-11195 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10733-11195 bp Feature: domain Description: nitrilase Location: 12539-13226 bp Feature: domain Description: nitrilase Location: 12 539-132 2 6 bp Feature: gene Location: 13532-14545 bp Feature: domain Description: YhcG Location: 13592-13916 bp Feature: domain Description: YhcG Location: 13592 -13916 bp Feature: domain Description: YhcG_C Location: 14054-14513 bp Feature: domain Description: YhcG_C Location: 14054-14513 bp Feature: gene Location: 14552-14812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, nitrilase (cl11424), YhcG (COG4804), YhcG_C

Seq: CAAERF010000375.1 (5390 bp)
Overview 1 RT 1: 3-5389 bp Neighborhood of RT #1 [3, 5389] SR_TndX_transposase Recombinase Zn_ribbon_recom RVT-GII VirD4 Feature: gene Location: 3-1319 bp Feature: domain Description: SR_TndX_transposase Location: 27-435 bp Feature: domain Description: SR_TndX_transposase Location: 27-43 5 bp Feature: domain Description: Recombinase Location: 534-891 bp Feature: domain Description: Recombinase Location: 53 4-891 bp Feature: domain Description: Zn_ribbon_recom Location: 939-1122 bp Feature: domain Description: Zn_ribbon_recom Location: 93 9-1122 bp Feature: gene Location: 1393-1608 bp Feature: gene Location: 1772-3679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2105-2849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2105-2849 bp Feature: gene Location: 4313-4981 bp Feature: domain Description: VirD4 Location: 4436-4937 bp Feature: domain Description: VirD4 Location: 443 6-493 7 bp Feature: gene Location: 5084-5389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, VirD4 (COG3505)

Seq: CAAERF010000426.1 (4720 bp)
Overview 1 RT 1: 140-2650 bp Neighborhood of RT #1 [140, 2958] RVT-DGRs NlpD Feature: gene Location: 140-391 bp Feature: gene Location: 321-1718 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 759-1347 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 759-134 7 bp Feature: gene Location: 1702-2016 bp Feature: gene Location: 2170-2958 bp Feature: domain Description: NlpD Location: 2470-2650 bp Feature: domain Description: NlpD Location: 24 70-2650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, NlpD (COG0739)

Seq: CAAERF010000210.1 (3723 bp)
Overview 1 RT 1: 282-2945 bp Neighborhood of RT #1 [282, 3094] RVT-GII Intron_maturas2 HNHc SpoVG Feature: gene Location: 282-2114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 546-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 46-1377 bp Feature: domain Description: Intron_maturas2 Location: 1449-1764 bp Feature: domain Description: Intron_maturas2 Location: 1449-1764 bp Feature: domain Description: HNHc Note: nucleases Location: 1911-2085 bp Feature: domain Description: HNHc Note: nucleases Location: 1911-2085 bp Feature: gene Location: 2220-2492 bp Feature: gene Location: 2546-3094 bp Feature: domain Description: SpoVG Location: 2711-2945 bp Feature: domain Description: SpoVG Location: 2711-2945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SpoVG (pfam04026)

Seq: CAAERF010000542.1 (5431 bp)
Overview 1 RT 1: 1-5428 bp Neighborhood of RT #1 [1, 5430] TraC-F-type Spr RVT-GII Intron_maturas2 HNHc DUF4315 Feature: gene Location: 1-936 bp Feature: domain Description: TraC-F-type Location: 16-742 bp Feature: domain Description: TraC-F-type Location: 16 -742 bp Feature: gene Location: 1020-2606 bp Feature: domain Description: Spr Location: 2310-2559 bp Feature: domain Description: Spr Location: 2310-2559 bp Feature: gene Location: 3201-4997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3468-4281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346 8-4281 bp Feature: domain Description: Intron_maturas2 Location: 4347-4626 bp Feature: domain Description: Intron_maturas2 Location: 4347-46 26 bp Feature: domain Description: HNHc Note: nucleases Location: 4815-4968 bp Feature: domain Description: HNHc Note: nucleases Location: 4815-496 8 bp Feature: gene Location: 5164-5430 bp Feature: domain Description: DUF4315 Location: 5257-5428 bp Feature: domain Description: DUF4315 Location: 5257-5428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4315 (pfam14193)

Seq: CAAERF010000201.1 (5047 bp)
Overview 1 RT 1: 878-5046 bp Neighborhood of RT #1 [878, 5046] MobC KOG1000 TMF_TATA_bd RVT-GII Intron_maturas2 HNHc Feature: gene Location: 878-1204 bp Feature: domain Description: MobC Location: 1073-1160 bp Feature: domain Description: MobC Location: 107 3-1160 bp Feature: gene Location: 1224-2531 bp Feature: domain Description: KOG1000 Location: 1536-1737 bp Feature: domain Description: KOG1000 Location: 1536-17 37 bp Feature: domain Description: TMF_TATA_bd Location: 2220-2391 bp Feature: domain Description: TMF_TATA_bd Location: 2220-2391 bp Feature: gene Location: 2723-4501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2984-3776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2984-37 7 6 bp Feature: domain Description: Intron_maturas2 Location: 3902-4100 bp Feature: domain Description: Intron_maturas2 Location: 3902-4100 bp Feature: domain Description: HNHc Note: nucleases Location: 4298-4463 bp Feature: domain Description: HNHc Note: nucleases Location: 4298-4463 bp Feature: gene Location: 4792-5046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), TMF_TATA_bd (pfam12325), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAERF010000419.1 (3950 bp)
Overview 1 RT 1: 1496-3861 bp Neighborhood of RT #1 [1496, 3947] RVT-GII Feature: gene Location: 1496-2413 bp Feature: gene Location: 2619-2810 bp Feature: gene Location: 2937-3947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3222-3861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3222-38 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAERF010000396.1 (5718 bp)
Overview 1 RT 1: 2822-5322 bp Neighborhood of RT #1 [2822, 5322] RVT-DGRs Feature: gene Location: 2822-2995 bp Feature: gene Location: 3011-3346 bp Feature: gene Location: 3298-4479 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3577-4183 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3577-4183 bp Feature: gene Location: 4650-4856 bp Feature: gene Location: 4864-5322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAERF010000048.1 (1799 bp)
Overview 1 RT 1: 2-1137 bp Neighborhood of RT #1 [2, 1565] RVT-GII GIIM Feature: gene Location: 2-361 bp Feature: gene Location: 474-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480-852 bp Feature: domain Description: GIIM Note: maturase Location: 906-1137 bp Feature: domain Description: GIIM Note: maturase Location: 906-1137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)