myRT

myRT report for GCA_900760135.1_SRS013476_7

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Seq: CAAEXW010000364.1 (4968 bp)
Overview 1 RT 1: 2337-4464 bp Neighborhood of RT #1 [2337, 4865] Bac_Flav_CT_G RVT_N RVT-GII GIIM Feature: gene Location: 2337-2582 bp Feature: domain Description: Bac_Flav_CT_G Location: 2340-2565 bp Feature: domain Description: Bac_Flav_CT_G Location: 2340-2565 bp Feature: gene Location: 2794-2940 bp Feature: gene Location: 3138-4865 bp Feature: domain Description: RVT_N Location: 3243-3486 bp Feature: domain Description: RVT_N Location: 3243-3486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3531-4179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3531 -41 79 bp Feature: domain Description: GIIM Note: maturase Location: 4230-4464 bp Feature: domain Description: GIIM Note: maturase Location: 4230-4464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAAEXW010000126.1 (6971 bp)
Overview 1 RT 1: 169-6071 bp Neighborhood of RT #1 [169, 6076] BglX RVT-GII GIIM DDE_Tnp_1 IS285 Feature: gene Location: 169-2553 bp Feature: domain Description: BglX Location: 865-1855 bp Feature: domain Description: BglX Location: 865-1855 bp Feature: gene Location: 2639-2815 bp Feature: gene Location: 2911-3624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2914-3133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 914-3133 bp Feature: domain Description: GIIM Note: maturase Location: 3193-3418 bp Feature: domain Description: GIIM Note: maturase Location: 3193-3418 bp Feature: gene Location: 3805-5022 bp Feature: domain Description: DDE_Tnp_1 Location: 4021-4789 bp Feature: domain Description: DDE_Tnp_1 Location: 402 1-4789 bp Feature: gene Location: 5201-6076 bp Feature: domain Description: IS285 Location: 5204-6071 bp Feature: domain Description: IS2 85 Location: 52 04-6071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BglX (COG1472), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), IS285 (COG3328)

Seq: CAAEXW010000398.1 (22302 bp)
Overview 1 RT 1: 1-2810 bp Neighborhood of RT #1 [1, 2810] RVT-DGRs Feature: gene Location: 1-480 bp Feature: gene Location: 590-1993 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 848-1445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 848-1445 bp Feature: gene Location: 2027-2527 bp Feature: gene Location: 2520-2810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAEXW010000003.1 (4602 bp)
Overview 1 RT 1: 1003-4601 bp Neighborhood of RT #1 [1003, 4600] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 1003-1590 bp Feature: gene Location: 1609-1827 bp Feature: domain Description: DUF4134 Location: 1630-1813 bp Feature: domain Description: DUF4 134 Location: 1630-1813 bp Feature: gene Location: 2444-4099 bp Feature: domain Description: RVT_N Location: 2501-2738 bp Feature: domain Description: RVT_N Location: 2501-2738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2789-3437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2789-34 37 bp Feature: domain Description: GIIM Note: maturase Location: 3494-3725 bp Feature: domain Description: GIIM Note: maturase Location: 34 94 -3725 bp Feature: gene Location: 4096-4338 bp Feature: domain Description: DUF4134 Location: 4243-4333 bp Feature: domain Description: DUF4 134 Location: 4 24 3-4 333 bp Feature: gene Location: 4349-4600 bp Feature: domain Description: DUF4133 Location: 4364-4601 bp Feature: domain Description: DUF4 133 Location: 4 364 -4 601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: CAAEXW010000038.1 (3333 bp)
Overview 1 RT 1: 1468-3154 bp Neighborhood of RT #1 [1468, 3330] RVT-GII Feature: gene Location: 1468-1803 bp Feature: gene Location: 1995-2168 bp Feature: gene Location: 2209-3330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2530-3154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 30-315 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAEXW010000248.1 (23818 bp)
Overview 1 RT 1: 20278-23585 bp Neighborhood of RT #1 [20278, 23585] FrvX FrvX FrvX DUF4313 RVT-UG27 Feature: gene Location: 20278-21345 bp Feature: domain Description: FrvX Location: 20284-20473 bp Feature: domain Description: FrvX Location: 20284-20473 bp Feature: domain Description: FrvX Location: 20572-20713 bp Feature: domain Description: FrvX Location: 20572-20713 bp Feature: domain Description: FrvX Location: 20836-20998 bp Feature: domain Description: FrvX Location: 20836 -20998 bp Feature: gene Location: 21421-21921 bp Feature: domain Description: DUF4313 Location: 21640-21904 bp Feature: domain Description: DUF4313 Location: 216 40-21904 bp Feature: gene Location: 21935-23200 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 22124-22760 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 22124-2276 0 bp Feature: gene Location: 23415-23585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FrvX (COG1363), DUF4313 (pfam14190), RVT-UG27