myRT

myRT report for GCA_900761635.1_SRS097889_12

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Seq: CAAFDP010000377.1 (8558 bp)
Overview 1 RT 1: 3413-8556 bp Neighborhood of RT #1 [3413, 8556] DUF3848 DUF3849 KOG1000 RVT-GII HNHc Feature: gene Location: 3413-4219 bp Feature: domain Description: DUF3848 Location: 3431-3710 bp Feature: domain Description: DUF3848 Location: 3431 -371 0 bp Feature: domain Description: DUF3849 Location: 3746-4124 bp Feature: domain Description: DUF3849 Location: 3746-41 24 bp Feature: gene Location: 4221-5582 bp Feature: domain Description: KOG1000 Location: 4578-4782 bp Feature: domain Description: KOG1 000 Location: 4578-4782 bp Feature: gene Location: 5659-7560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977-6703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977-6703 bp Feature: domain Description: HNHc Note: nucleases Location: 7282-7450 bp Feature: domain Description: HNHc Note: nucleases Location: 7282-7450 bp Feature: gene Location: 7901-8269 bp Feature: gene Location: 8329-8556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3848 (pfam12959), DUF3849 (pfam12960), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, HNHc (smart00507)

Seq: CAAFDP010000068.1 (27074 bp)
Overview 1 RT 1: 669-8006 bp Neighborhood of RT #1 [669, 8125] RecQ RVT-Retrons COG3972 COG3972 UvrD_C_2 Feature: gene Location: 669-4145 bp Feature: domain Description: RecQ Location: 747-2409 bp Feature: domain Description: RecQ Location: 747-2 409 bp Feature: gene Location: 4361-4606 bp Feature: gene Location: 4608-5585 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4770-5319 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4770-5319 bp Feature: gene Location: 5954-6370 bp Feature: gene Location: 6404-8125 bp Feature: domain Description: COG3972 Location: 7124-7256 bp Feature: domain Description: COG3972 Location: 712 4-72 56 bp Feature: domain Description: COG3972 Location: 7298-7514 bp Feature: domain Description: COG3972 Location: 72 98-7514 bp Feature: domain Description: UvrD_C_2 Location: 7865-8006 bp Feature: domain Description: UvrD_C_2 Location: 7865-8006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RecQ (COG0514), RVT-Retrons, COG3972 (Superfamily I DNA and RNA helicases ), UvrD_C_2 (pfam13538)

Seq: CAAFDP010000340.1 (3361 bp)
Overview 1 RT 1: 3-3358 bp Neighborhood of RT #1 [3, 3360] PRK13914 RVT-GII Intron_maturas2 HNHc DUF4315 DUF4366 Feature: gene Location: 3-164 bp Feature: domain Description: PRK13914 Location: 24-117 bp Feature: domain Description: PRK13 914 Location: 24-117 bp Feature: gene Location: 759-2555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1026-1839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1026-183 9 bp Feature: domain Description: Intron_maturas2 Location: 1905-2184 bp Feature: domain Description: Intron_maturas2 Location: 1905-2184 bp Feature: domain Description: HNHc Note: nucleases Location: 2373-2526 bp Feature: domain Description: HNHc Note: nucleases Location: 23 73 -2526 bp Feature: gene Location: 2802-3068 bp Feature: domain Description: DUF4315 Location: 2814-3009 bp Feature: domain Description: DUF43 15 Location: 2814-3 009 bp Feature: gene Location: 3058-3360 bp Feature: domain Description: DUF4366 Location: 3226-3358 bp Feature: domain Description: DUF43 66 Location: 3 226-3 3 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13914 (invasion associated endopeptidase), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4315 (pfam14193), DUF4366 (pfam14283)

Seq: CAAFDP010000327.1 (3932 bp)
Overview 1 RT 1: 124-3619 bp Neighborhood of RT #1 [124, 3783] RVT-UG5 nitrilase Peptidase_C26 Peptidase_C26 Feature: gene Location: 124-3279 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 613-1117 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 613-1117 bp Feature: domain Description: nitrilase Location: 2500-3157 bp Feature: domain Description: nitrilase Location: 2500-3157 bp Feature: gene Location: 3391-3783 bp Feature: domain Description: Peptidase_C26 Location: 3412-3487 bp Feature: domain Description: Peptidase_C26 Location: 34 12-34 87 bp Feature: domain Description: Peptidase_C26 Location: 3490-3619 bp Feature: domain Description: Peptidase_C26 Location: 34 90-3619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), Peptidase_C26 (pfam07722)

Seq: CAAFDP010000157.1 (3346 bp)
Overview 1 RT 1: 1-3097 bp Neighborhood of RT #1 [1, 3097] TraG_VirD4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-510 bp Feature: domain Description: TraG_VirD4 Location: 37-508 bp Feature: domain Description: TraG_VirD4 Location: 37-5 08 bp Feature: gene Location: 675-2489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1761 bp Feature: domain Description: Intron_maturas2 Location: 1830-2172 bp Feature: domain Description: Intron_maturas2 Location: 1830-2172 bp Feature: domain Description: HNHc Note: nucleases Location: 2310-2460 bp Feature: domain Description: HNHc Note: nucleases Location: 2310-2460 bp Feature: gene Location: 2508-2642 bp Feature: gene Location: 2750-3097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAFDP010000361.1 (3123 bp)
Overview 1 RT 1: 1-3119 bp Neighborhood of RT #1 [1, 3121] COG4646 RVT-GII HNHc COG4646 Feature: gene Location: 1-138 bp Feature: domain Description: COG4646 Location: 10-124 bp Feature: domain Description: COG46 46 Location: 10-124 bp Feature: gene Location: 838-2754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162-1876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116 2-1876 bp Feature: domain Description: HNHc Note: nucleases Location: 2506-2677 bp Feature: domain Description: HNHc Note: nucleases Location: 2506 -26 77 bp Feature: gene Location: 2981-3121 bp Feature: domain Description: COG4646 Location: 2984-3119 bp Feature: domain Description: COG46 46 Location: 2984-3119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HNHc (smart00507)

Seq: CAAFDP010000403.1 (9123 bp)
Overview 1 RT 1: 5338-9122 bp Neighborhood of RT #1 [5338, 9122] AAA-ATPase_like PDDEXK_9 RVT-Retrons Feature: gene Location: 5338-5484 bp Feature: gene Location: 5905-7698 bp Feature: domain Description: AAA-ATPase_like Location: 6037-6910 bp Feature: domain Description: AAA-ATPase_like Location: 6037 -6910 bp Feature: domain Description: PDDEXK_9 Location: 7384-7681 bp Feature: domain Description: PDDEXK_9 Location: 7 384-7 681 bp Feature: gene Location: 7735-8616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7846-8389 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7 846-8389 bp Feature: gene Location: 8613-9122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-Retrons

Seq: CAAFDP010000103.1 (2575 bp)
Overview 1 RT 1: 2-2289 bp Neighborhood of RT #1 [2, 2573] RVT-GII DUF4316 Abi_2 Feature: gene Location: 2-994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-644 bp Feature: gene Location: 1246-1650 bp Feature: domain Description: DUF4316 Location: 1414-1543 bp Feature: domain Description: DUF4316 Location: 1414-1543 bp Feature: gene Location: 1776-2573 bp Feature: domain Description: Abi_2 Location: 1782-2289 bp Feature: domain Description: Abi_2 Location: 178 2-228 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4316 (pfam14195), Abi_2 (pfam07751)

Seq: CAAFDP010000386.1 (2602 bp)
Overview 1 RT 1: 176-2600 bp Neighborhood of RT #1 [176, 2600] RVT-GII Intron_maturas2 Feature: gene Location: 176-1966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443-1256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443-1256 bp Feature: domain Description: Intron_maturas2 Location: 1340-1637 bp Feature: domain Description: Intron_maturas2 Location: 1340-1637 bp Feature: gene Location: 2460-2600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: CAAFDP010000177.1 (5757 bp)
Overview 1 RT 1: 664-3824 bp Neighborhood of RT #1 [664, 3824] Maff2 RVT-GII HNHc Feature: gene Location: 664-957 bp Feature: gene Location: 987-1121 bp Feature: domain Description: Maff2 Location: 1026-1116 bp Feature: domain Description: Maff2 Location: 10 26-1116 bp Feature: gene Location: 1242-3119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1569-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1569-2307 bp Feature: domain Description: HNHc Note: nucleases Location: 2844-3006 bp Feature: domain Description: HNHc Note: nucleases Location: 2844-3006 bp Feature: gene Location: 3169-3339 bp Feature: gene Location: 3534-3824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507)

Seq: CAAFDP010000220.1 (3081 bp)
Overview 1 RT 1: 127-3078 bp Neighborhood of RT #1 [127, 3078] RVT-GII Feature: gene Location: 127-297 bp Feature: gene Location: 321-2231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651-1395 bp Feature: gene Location: 2857-3078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAFDP010000159.1 (2824 bp)
Overview 1 RT 1: 261-2821 bp Neighborhood of RT #1 [261, 2821] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 261-719 bp Feature: gene Location: 735-2525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1011-1818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1011-1818 bp Feature: domain Description: Intron_maturas2 Location: 1995-2187 bp Feature: domain Description: Intron_maturas2 Location: 1995-2187 bp Feature: domain Description: HNHc Note: nucleases Location: 2361-2505 bp Feature: domain Description: HNHc Note: nucleases Location: 2361-2505 bp Feature: gene Location: 2597-2821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)