myRT

myRT report for GCA_900761685.1_SRS098061_21

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Seq: CAAFDY010000063.1 (25215 bp)
Overview 1 RT 1: 268-7404 bp Neighborhood of RT #1 [268, 7700] COG1373 group_II_RT_mat RVT-UG19 Resolvase Recombinase Zn_ribbon_recom GH36 Feature: gene Location: 268-1710 bp Feature: domain Description: COG1373 Location: 409-1609 bp Feature: domain Description: COG1 373 Location: 409-1 609 bp Feature: gene Location: 1734-3797 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1833-2058 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 833-2058 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 2118-2610 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 21 1 8-261 0 bp Feature: gene Location: 3813-5267 bp Feature: domain Description: Resolvase Location: 3822-4254 bp Feature: domain Description: Resolvase Location: 3822-4254 bp Feature: domain Description: Recombinase Location: 4329-4578 bp Feature: domain Description: Recombinase Location: 4329-4578 bp Feature: domain Description: Zn_ribbon_recom Location: 4620-4797 bp Feature: domain Description: Zn_ribbon_recom Location: 4620-4797 bp Feature: gene Location: 5544-7700 bp Feature: domain Description: GH36 Location: 6531-7404 bp Feature: domain Description: GH36 Location: 6531 -7404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), group_II_RT_mat (TIGR04416), RVT-UG19, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GH36 (cd14791)

Seq: CAAFDY010000025.1 (139816 bp)
Overview 1 RT 1: 136282-139076 bp Neighborhood of RT #1 [136282, 139426] MviM Aldose_epim RVT-UG2 Feature: gene Location: 136282-137271 bp Feature: domain Description: MviM Location: 136294-136723 bp Feature: domain Description: MviM Location: 1362 94-13672 3 bp Feature: gene Location: 137258-138175 bp Feature: domain Description: Aldose_epim Location: 137312-138131 bp Feature: domain Description: Aldose_epim Location: 137312 -138131 bp Feature: gene Location: 138818-139426 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 138848-139076 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 138848-139076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), Aldose_epim (pfam01263), RVT-UG2

Seq: CAAFDY010000039.1 (8889 bp)
Overview 1 RT 1: 6012-8509 bp Neighborhood of RT #1 [6012, 8886] Acetyltransf_7 TraG-D_C RVT-GII GIIM Feature: gene Location: 6012-6617 bp Feature: domain Description: Acetyltransf_7 Location: 6306-6486 bp Feature: domain Description: Acetyltransf_7 Location: 63 06-6486 bp Feature: gene Location: 6702-7991 bp Feature: domain Description: TraG-D_C Location: 7368-7701 bp Feature: domain Description: TraG-D_C Location: 73 68-7701 bp Feature: gene Location: 7912-8886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7915-8224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7915-8224 bp Feature: domain Description: GIIM Note: maturase Location: 8278-8509 bp Feature: domain Description: GIIM Note: maturase Location: 8278-8509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_7 (pfam13508), TraG-D_C (pfam12696), RVT-GII, GIIM (pfam08388)

Seq: CAAFDY010000017.1 (1913 bp)
Overview 1 RT 1: 36-1884 bp Neighborhood of RT #1 [36, 1884] RVT-GII GIIM Feature: gene Location: 36-1655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 0-1164 bp Feature: domain Description: GIIM Note: maturase Location: 1224-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1224 -14 4 6 bp Feature: gene Location: 1720-1884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAFDY010000086.1 (32589 bp)
Overview 1 RT 1: 26070-30292 bp Neighborhood of RT #1 [26070, 30309] Avd_like RVT-DGRs CADG CADG ChiA1_BD ChiA1_BD Feature: gene Location: 26070-26456 bp Feature: gene Location: 26461-26706 bp Feature: domain Description: Avd_like Location: 26464-26689 bp Feature: domain Description: Avd_like Location: 26464-26689 bp Feature: gene Location: 26892-28058 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27201-27804 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27201-27804 bp Feature: gene Location: 28043-29779 bp Feature: domain Description: CADG Location: 28952-29150 bp Feature: domain Description: CADG Location: 2895 2-2915 0 bp Feature: domain Description: CADG Location: 29243-29465 bp Feature: domain Description: CADG Location: 29243-29465 bp Feature: gene Location: 29776-30309 bp Feature: domain Description: ChiA1_BD Location: 29983-30115 bp Feature: domain Description: ChiA1_BD Location: 29983-30115 bp Feature: domain Description: ChiA1_BD Location: 30202-30292 bp Feature: domain Description: ChiA1_BD Location: 30202-30292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, CADG (smart00736), ChiA1_BD (cd12214)