myRT

myRT report for GCA_900761785.1_SRS098827_17

Download annotations/find similar RTs

Seq: CAAFEE010000562.1 (37354 bp)
Overview 1 RT 1: 1795-4406 bp Neighborhood of RT #1 [1795, 4406] RVT-GII GIIM RVT-GII Feature: gene Location: 1795-2001 bp Feature: gene Location: 2137-2394 bp Feature: gene Location: 2494-3012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2506-2746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2506-2746 bp Feature: domain Description: GIIM Note: maturase Location: 2758-2989 bp Feature: domain Description: GIIM Note: maturase Location: 2758-2989 bp Feature: gene Location: 3186-3674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3522-3660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3522-3660 bp Feature: gene Location: 3964-4209 bp Feature: gene Location: 4278-4406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAFEE010000438.1 (1097 bp)
Overview 1 RT 1: 107-929 bp Neighborhood of RT #1 [107, 1096] RVT-GII GIIM Feature: gene Location: 107-1096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113-656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113-656 bp Feature: domain Description: GIIM Note: maturase Location: 719-929 bp Feature: domain Description: GIIM Note: maturase Location: 719-92 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAFEE010000211.1 (119216 bp)
Overview 1 RT 1: 30706-40574 bp Neighborhood of RT #1 [30706, 40574] RVT-DGRs Laminin_G_3 Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 30706-30948 bp Feature: gene Location: 31131-31616 bp Feature: gene Location: 31616-32920 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31826-32423 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 1826-3 2423 bp Feature: gene Location: 33413-40261 bp Feature: domain Description: Laminin_G_3 Location: 35030-35132 bp Feature: domain Description: Laminin_G_3 Location: 3 503 0-3 513 2 bp Feature: domain Description: Laminin_G_3 Location: 35780-36158 bp Feature: domain Description: Laminin_G_3 Location: 3 5780-3 6158 bp Feature: domain Description: pfam08757 Location: 36419-37289 bp Feature: domain Description: pfam08757 Location: 3 6419-3 7289 bp Feature: domain Description: LRR_AMN1 Location: 37916-38381 bp Feature: domain Description: LRR_AMN1 Location: 3 7916-3 83 81 bp Feature: gene Location: 40269-40574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: CAAFEE010000284.1 (55965 bp)
Overview 1 RT 1: 2145-5790 bp Neighborhood of RT #1 [2145, 5790] RVT-DGRs Feature: gene Location: 2145-2525 bp Feature: gene Location: 2522-2950 bp Feature: gene Location: 2913-4100 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3246-3873 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 324 6-3873 bp Feature: gene Location: 4222-4359 bp Feature: gene Location: 4432-5790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAFEE010000215.1 (4658 bp)
Overview 1 RT 1: 1-3613 bp Neighborhood of RT #1 [1, 3717] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 Feature: gene Location: 1-606 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-598 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-5 98 bp Feature: gene Location: 1175-2998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439-2261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439-2261 bp Feature: domain Description: Intron_maturas2 Location: 2435-2678 bp Feature: domain Description: Intron_maturas2 Location: 2435 -2678 bp Feature: domain Description: HNHc Note: nucleases Location: 2789-2960 bp Feature: domain Description: HNHc Note: nucleases Location: 2789-2960 bp Feature: gene Location: 3093-3329 bp Feature: gene Location: 3268-3717 bp Feature: domain Description: DUF3876 Location: 3349-3613 bp Feature: domain Description: DUF3876 Location: 3349-3613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992)

Seq: CAAFEE010000045.1 (13000 bp)
Overview 1 RT 1: 63-2956 bp Neighborhood of RT #1 [63, 2956] RVT-DGRs Feature: gene Location: 63-308 bp Feature: gene Location: 476-631 bp Feature: gene Location: 748-2052 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 961-1555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96 1-1555 bp Feature: gene Location: 2049-2534 bp Feature: gene Location: 2714-2956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAFEE010000427.1 (2581 bp)
Overview 1 RT 1: 334-2580 bp Neighborhood of RT #1 [334, 2580] RVT_N RVT-GII GIIM Feature: gene Location: 334-651 bp Feature: gene Location: 725-2380 bp Feature: domain Description: RVT_N Location: 779-1022 bp Feature: domain Description: RVT_N Location: 7 7 9-1022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1067-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1067 -17 12 bp Feature: domain Description: GIIM Note: maturase Location: 1763-1997 bp Feature: domain Description: GIIM Note: maturase Location: 17 63-1997 bp Feature: gene Location: 2377-2580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAAFEE010000250.1 (2365 bp)
Overview 1 RT 1: 70-1873 bp Neighborhood of RT #1 [70, 2271] RVT_N RVT-GII GIIM Feature: gene Location: 70-225 bp Feature: gene Location: 589-2271 bp Feature: domain Description: RVT_N Location: 652-895 bp Feature: domain Description: RVT_N Location: 652-8 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 940-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 940-158 8 bp Feature: domain Description: GIIM Note: maturase Location: 1639-1873 bp Feature: domain Description: GIIM Note: maturase Location: 1639-18 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAAFEE010000251.1 (1320 bp)
Overview 1 RT 1: 1-1048 bp Neighborhood of RT #1 [1, 1215] RVT-GII GIIM Feature: gene Location: 1-1215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-775 bp Feature: domain Description: GIIM Note: maturase Location: 838-1048 bp Feature: domain Description: GIIM Note: maturase Location: 838-1048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAFEE010000415.1 (17004 bp)
Overview 1 RT 1: 6539-17001 bp Neighborhood of RT #1 [6539, 17001] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 Feature: gene Location: 6539-7114 bp Feature: gene Location: 7302-9491 bp Feature: gene Location: 9696-10829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10020-10566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10 020-10 566 bp Feature: gene Location: 10846-16698 bp Feature: domain Description: DUF4011 Location: 12061-12574 bp Feature: domain Description: DUF4011 Location: 12061-12574 bp Feature: domain Description: DEXXQc_SF1 Location: 12913-13507 bp Feature: domain Description: DEXXQc_SF1 Location: 12913-13507 bp Feature: domain Description: DEXXQc_SF1 Location: 14329-15100 bp Feature: domain Description: DEXXQc_SF1 Location: 14329-1510 0 bp Feature: domain Description: TIGR00376 Location: 15229-15619 bp Feature: domain Description: TIGR00376 Location: 15229-15619 bp Feature: domain Description: MTES_1575 Location: 15772-16057 bp Feature: domain Description: MTES_1575 Location: 15772-16057 bp Feature: domain Description: DUF3320 Location: 16204-16348 bp Feature: domain Description: DUF3320 Location: 16204-16348 bp Feature: gene Location: 16810-17001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: CAAFEE010000370.1 (4427 bp)
Overview 1 RT 1: 273-4391 bp Neighborhood of RT #1 [273, 4408] RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 273-659 bp Feature: gene Location: 883-2691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11 47-1969 bp Feature: domain Description: Intron_maturas2 Location: 2092-2347 bp Feature: domain Description: Intron_maturas2 Location: 2092-2347 bp Feature: gene Location: 3242-4408 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3278-3527 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3278-3527 bp Feature: domain Description: Phage_int_SAM_5 Location: 3566-3872 bp Feature: domain Description: Phage_int_SAM_5 Location: 3566-3872 bp Feature: domain Description: INTN1_C_like Location: 3926-4391 bp Feature: domain Description: INTN1_C_like Location: 3926-4391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)