myRT

myRT report for GCA_900765375.1_SRS294866_13

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Seq: CAAFSB010000102.1 (2891 bp)
Overview 1 RT 1: 71-2875 bp Neighborhood of RT #1 [71, 2889] RVT-GII TraG-D_C Feature: gene Location: 71-1978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 -1 1 45 bp Feature: gene Location: 2194-2889 bp Feature: domain Description: TraG-D_C Location: 2590-2875 bp Feature: domain Description: TraG-D_C Location: 2590-2875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraG-D_C (pfam12696)

Seq: CAAFSB010000376.1 (5871 bp)
Overview 1 RT 1: 3633-5464 bp Neighborhood of RT #1 [3633, 5625] MalY C_S_lyase_PatB RVT-GII GIIM Feature: gene Location: 3633-4067 bp Feature: domain Description: MalY Location: 3645-4029 bp Feature: domain Description: MalY Location: 3645-402 9 bp Feature: gene Location: 4090-4257 bp Feature: domain Description: C_S_lyase_PatB Location: 4123-4240 bp Feature: domain Description: C_S_lyase_PatB Location: 412 3-42 40 bp Feature: gene Location: 4348-5625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5176 bp Feature: domain Description: GIIM Note: maturase Location: 5242-5464 bp Feature: domain Description: GIIM Note: maturase Location: 52 42 -5464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MalY (COG1168), C_S_lyase_PatB (TIGR04350), RVT-GII, GIIM (pfam08388)

Seq: CAAFSB010000021.1 (4919 bp)
Overview 1 RT 1: 512-4019 bp Neighborhood of RT #1 [512, 4159] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 512-2782 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 719-1325 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 719-13 25 bp Feature: domain Description: Cas1_I-II-III Location: 1784-2741 bp Feature: domain Description: Cas1_I-II-III Location: 1784-2741 bp Feature: gene Location: 2802-3746 bp Feature: domain Description: Cmr6_III-B Location: 2958-3735 bp Feature: domain Description: Cmr6_III-B Location: 2958-3 73 5 bp Feature: gene Location: 3749-4159 bp Feature: domain Description: Cas_Cmr5 Location: 3797-4019 bp Feature: domain Description: Cas_Cmr5 Location: 3 797-4019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)