myRT

myRT report for GCA_900765785.1_SRS294954_23

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Seq: CAAFSZ010000224.1 (61609 bp)
Overview 1 RT 1: 35756-43572 bp Neighborhood of RT #1 [35756, 43572] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 35756-41164 bp Feature: domain Description: DUF1566 Location: 40892-41153 bp Feature: domain Description: DUF1 566 Location: 40892-41 1 53 bp Feature: gene Location: 41206-41562 bp Feature: domain Description: Avd_like Location: 41233-41542 bp Feature: domain Description: Avd_like Location: 41 233-41 542 bp Feature: gene Location: 41570-42982 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41960-42662 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 960-42662 bp Feature: gene Location: 42924-43316 bp Feature: gene Location: 43201-43572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: CAAFSZ010000478.1 (33611 bp)
Overview 1 RT 1: 20724-24424 bp Neighborhood of RT #1 [20724, 24459] RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 20724-21362 bp Feature: gene Location: 21380-21802 bp Feature: gene Location: 21940-22983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22162-22741 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 162 -2 2 741 bp Feature: gene Location: 22995-23204 bp Feature: gene Location: 23311-24459 bp Feature: domain Description: Arm-DNA-bind_5 Location: 23350-23647 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 3350-2 3647 bp Feature: domain Description: Phage_int_SAM_5 Location: 23701-24004 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 3701-2 4004 bp Feature: domain Description: INTN1_C_like Location: 24058-24424 bp Feature: domain Description: INTN1_C_like Location: 2 4058-2 442 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: CAAFSZ010000115.1 (59965 bp)
Overview 1 RT 1: 203-2948 bp Neighborhood of RT #1 [203, 2974] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 203-1624 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 575-1280 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 575-1280 bp Feature: gene Location: 1639-2019 bp Feature: domain Description: Avd_like Location: 1666-1972 bp Feature: domain Description: Avd_like Location: 1666-1972 bp Feature: gene Location: 2165-2974 bp Feature: domain Description: DUF1566 Location: 2699-2948 bp Feature: domain Description: DUF1566 Location: 2699-2948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: CAAFSZ010000608.1 (53178 bp)
Overview 1 RT 1: 15541-18152 bp Neighborhood of RT #1 [15541, 18152] RVT-GII GIIM RVT-GII Feature: gene Location: 15541-15747 bp Feature: gene Location: 15883-16140 bp Feature: gene Location: 16240-16758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16252-16492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16252-164 92 bp Feature: domain Description: GIIM Note: maturase Location: 16504-16735 bp Feature: domain Description: GIIM Note: maturase Location: 16504 -16735 bp Feature: gene Location: 16932-17420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17268-17406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17268-174 06 bp Feature: gene Location: 17710-17955 bp Feature: gene Location: 18024-18152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAFSZ010000463.1 (2445 bp)
Overview 1 RT 1: 3-2442 bp Neighborhood of RT #1 [3, 2442] RVT-Retrons Feature: gene Location: 3-578 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 327-576 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 327-5 76 bp Feature: gene Location: 784-2442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CAAFSZ010000249.1 (15227 bp)
Overview 1 RT 1: 1-4780 bp Neighborhood of RT #1 [1, 4780] RVT-Retrons DUF5106 Thioredoxin_8 Feature: gene Location: 1-642 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-382 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-382 bp Feature: gene Location: 645-1649 bp Feature: domain Description: DUF5106 Location: 795-1212 bp Feature: domain Description: DUF5106 Location: 795-1212 bp Feature: domain Description: Thioredoxin_8 Location: 1299-1569 bp Feature: domain Description: Thioredoxin_8 Location: 1299-156 9 bp Feature: gene Location: 1655-4780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF5106 (pfam17127), Thioredoxin_8 (pfam13905)

Seq: CAAFSZ010000250.1 (6648 bp)
Overview 1 RT 1: 1-6157 bp Neighborhood of RT #1 [1, 6507] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 Feature: gene Location: 1-645 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-388 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-388 bp Feature: gene Location: 679-6507 bp Feature: domain Description: DUF4011 Location: 1834-2347 bp Feature: domain Description: DUF4011 Location: 1834-2347 bp Feature: domain Description: DEXXQc_SF1 Location: 2686-3241 bp Feature: domain Description: DEXXQc_SF1 Location: 2686-3241 bp Feature: domain Description: DEXXQc_SF1 Location: 4123-4873 bp Feature: domain Description: DEXXQc_SF1 Location: 4123-487 3 bp Feature: domain Description: TIGR00376 Location: 5005-5395 bp Feature: domain Description: TIGR0037 6 Location: 5005-5395 bp Feature: domain Description: MTES_1575 Location: 5545-5833 bp Feature: domain Description: MTES_157 5 Location: 5545-5833 bp Feature: domain Description: DUF3320 Location: 6013-6157 bp Feature: domain Description: DUF3320 Location: 6013-6157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: CAAFSZ010000405.1 (137345 bp)
Overview 1 RT 1: 121737-131204 bp Neighborhood of RT #1 [121737, 131209] Laminin_G_3 Laminin_G_3 RVT-DGRs ArgoMid ArgoMid Feature: gene Location: 121737-128483 bp Feature: domain Description: Laminin_G_3 Location: 123198-123291 bp Feature: domain Description: Laminin_G_3 Location: 123198 -123291 bp Feature: domain Description: Laminin_G_3 Location: 123942-124362 bp Feature: domain Description: Laminin_G_3 Location: 123942-124362 bp Feature: gene Location: 128732-128902 bp Feature: gene Location: 128999-130303 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 129212-129806 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 129212-1298 06 bp Feature: gene Location: 130300-130785 bp Feature: gene Location: 130967-131209 bp Feature: domain Description: ArgoMid Location: 130982-131090 bp Feature: domain Description: ArgoMid Location: 13098 2-131090 bp Feature: domain Description: ArgoMid Location: 131105-131204 bp Feature: domain Description: ArgoMid Location: 131105-131204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs, ArgoMid (pfam16487)

Seq: CAAFSZ010000279.1 (2709 bp)
Overview 1 RT 1: 2-1742 bp Neighborhood of RT #1 [2, 2578] RVT-GII Feature: gene Location: 2-127 bp Feature: gene Location: 668-2578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 9 8-1742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAFSZ010000094.1 (52476 bp)
Overview 1 RT 1: 39882-43261 bp Neighborhood of RT #1 [39882, 43261] RVT-DGRs Feature: gene Location: 39882-41201 bp Feature: gene Location: 41231-41434 bp Feature: gene Location: 41718-42533 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42051-42378 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42051-42378 bp Feature: gene Location: 42499-42729 bp Feature: gene Location: 42677-43261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAFSZ010000160.1 (78243 bp)
Overview 1 RT 1: 3-11908 bp Neighborhood of RT #1 [3, 11913] RpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons AAA-ATPase_like PDDEXK_9 Feature: gene Location: 3-218 bp Feature: domain Description: RpsA Location: 87-219 bp Feature: domain Description: RpsA Location: 87-219 bp Feature: gene Location: 330-6290 bp Feature: domain Description: DUF4011 Location: 1545-2058 bp Feature: domain Description: DUF4011 Location: 1545-2058 bp Feature: domain Description: DEXXQc_SF1 Location: 2397-2829 bp Feature: domain Description: DEXXQc_SF1 Location: 2397-2829 bp Feature: domain Description: DEXXQc_SF1 Location: 3819-4584 bp Feature: domain Description: DEXXQc_SF1 Location: 3819-4584 bp Feature: domain Description: TIGR00376 Location: 4713-5103 bp Feature: domain Description: TIGR00376 Location: 4713-5103 bp Feature: domain Description: MTES_1575 Location: 5256-5541 bp Feature: domain Description: MTES_1575 Location: 5256-5541 bp Feature: domain Description: DUF3320 Location: 5796-5940 bp Feature: domain Description: DUF3320 Location: 5796-5940 bp Feature: gene Location: 6307-7365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6556-7096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6556-7096 bp Feature: gene Location: 7570-9777 bp Feature: gene Location: 10201-11913 bp Feature: domain Description: AAA-ATPase_like Location: 10222-11116 bp Feature: domain Description: AAA-ATPase_like Location: 10222-11 11 6 bp Feature: domain Description: PDDEXK_9 Location: 11572-11908 bp Feature: domain Description: PDDEXK_9 Location: 11 572-11 908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpsA (COG0539), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: CAAFSZ010000234.1 (43179 bp)
Overview 1 RT 1: 11695-15279 bp Neighborhood of RT #1 [11695, 15279] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 11695-12504 bp Feature: domain Description: DUF1566 Location: 12235-12478 bp Feature: domain Description: DUF1566 Location: 12 235-12 478 bp Feature: gene Location: 12659-13096 bp Feature: domain Description: Avd_like Location: 12692-13001 bp Feature: domain Description: Avd_like Location: 12 692-13001 bp Feature: gene Location: 13111-14553 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13507-14209 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13507-14209 bp Feature: gene Location: 14519-14794 bp Feature: gene Location: 14992-15279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: CAAFSZ010000306.1 (2628 bp)
Overview 1 RT 1: 99-2626 bp Neighborhood of RT #1 [99, 2626] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 99-1910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1185 bp Feature: domain Description: Intron_maturas2 Location: 1260-1581 bp Feature: domain Description: Intron_maturas2 Location: 1260-1581 bp Feature: domain Description: HNHc Note: nucleases Location: 1731-1881 bp Feature: domain Description: HNHc Note: nucleases Location: 1731-1881 bp Feature: gene Location: 1988-2446 bp Feature: domain Description: Bac_Flav_CT_G Location: 2009-2429 bp Feature: domain Description: Bac_Flav_CT_G Location: 2009-2429 bp Feature: gene Location: 2486-2626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)