myRT

myRT report for GCA_900766145.1_SRS295027_34

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Seq: CAAFUG010000329.1 (6627 bp)
Overview 1 RT 1: 511-6613 bp Neighborhood of RT #1 [511, 6613] HTH_Tnp_1 PHA02517 RVT-UG24 HD Feature: gene Location: 511-1689 bp Feature: domain Description: HTH_Tnp_1 Location: 520-727 bp Feature: domain Description: HTH_Tnp_1 Location: 520-727 bp Feature: domain Description: PHA02517 Location: 853-1660 bp Feature: domain Description: PHA0251 7 Location: 853-1 660 bp Feature: gene Location: 2534-3064 bp Feature: gene Location: 3074-6322 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 3587-4046 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 3587-4046 bp Feature: domain Description: HD Location: 5273-5771 bp Feature: domain Description: HD Location: 5273-5771 bp Feature: gene Location: 6395-6613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG24, HD (pfam01966)

Seq: CAAFUG010000034.1 (36990 bp)
Overview 1 RT 1: 8444-13067 bp Neighborhood of RT #1 [8444, 13078] RVT-GII Intron_maturas2 HNHc VirD4 TrbC Feature: gene Location: 8444-8944 bp Feature: gene Location: 9227-9466 bp Feature: gene Location: 9505-11322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9769-10588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9769-10588 bp Feature: domain Description: Intron_maturas2 Location: 10660-10963 bp Feature: domain Description: Intron_maturas2 Location: 10660-10963 bp Feature: domain Description: HNHc Note: nucleases Location: 11143-11287 bp Feature: domain Description: HNHc Note: nucleases Location: 11143-112 87 bp Feature: gene Location: 11413-12762 bp Feature: domain Description: VirD4 Location: 11431-12589 bp Feature: domain Description: VirD4 Location: 11431-12 589 bp Feature: gene Location: 12749-13078 bp Feature: domain Description: TrbC Location: 12788-13067 bp Feature: domain Description: TrbC Location: 12 788-13067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), TrbC (pfam04956)

Seq: CAAFUG010000351.1 (6650 bp)
Overview 1 RT 1: 56-2016 bp Neighborhood of RT #1 [56, 2016] RVT-DGRs Feature: gene Location: 56-1216 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 335-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 3 5-947 bp Feature: gene Location: 1334-1744 bp Feature: gene Location: 1744-2016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs