myRT

myRT report for GCA_900766175.1_SRS311497_16

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Seq: CAAFUM010000022.1 (90228 bp)
Overview 1 RT 1: 47609-49960 bp Neighborhood of RT #1 [47609, 49960] Avd_like RVT-DGRs Feature: gene Location: 47609-48019 bp Feature: domain Description: Avd_like Location: 47675-47999 bp Feature: domain Description: Avd_like Location: 47675-47999 bp Feature: gene Location: 48186-48359 bp Feature: gene Location: 48410-49549 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48689-49292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48689-49292 bp Feature: gene Location: 49546-49767 bp Feature: gene Location: 49760-49960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000164.1 (3079 bp)
Overview 1 RT 1: 3-3029 bp Neighborhood of RT #1 [3, 3076] RVT-GII VirD4 Feature: gene Location: 3-128 bp Feature: gene Location: 276-2183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 609-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 609-1353 bp Feature: gene Location: 2354-2494 bp Feature: gene Location: 2816-3076 bp Feature: domain Description: VirD4 Location: 2828-3029 bp Feature: domain Description: VirD4 Location: 2 82 8-302 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000131.1 (238122 bp)
Overview 1 RT 1: 135704-138368 bp Neighborhood of RT #1 [135704, 138385] Phage_XkdX RVT-DGRs Phage_holin_5_2 Feature: gene Location: 135704-135847 bp Feature: domain Description: Phage_XkdX Location: 135725-135842 bp Feature: domain Description: Phage_XkdX Location: 13 5725-13 5842 bp Feature: gene Location: 135844-136329 bp Feature: gene Location: 136540-137736 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 136735-137458 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 673 5-13 7458 bp Feature: gene Location: 137739-138077 bp Feature: gene Location: 138089-138385 bp Feature: domain Description: Phage_holin_5_2 Location: 138137-138368 bp Feature: domain Description: Phage_holin_5_2 Location: 13 813 7-13 83 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000018.1 (264811 bp)
Overview 1 RT 1: 15232-18661 bp Neighborhood of RT #1 [15232, 18661] RVT-DGRs Feature: gene Location: 15232-15408 bp Feature: gene Location: 15515-15844 bp Feature: gene Location: 15808-17019 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16042-16762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1604 2-16762 bp Feature: gene Location: 17173-17715 bp Feature: gene Location: 17759-18661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000200.1 (96081 bp)
Overview 1 RT 1: 94391-95967 bp Neighborhood of RT #1 [94391, 96080] RVT-GII GIIM Feature: gene Location: 94391-94528 bp Feature: gene Location: 94694-94852 bp Feature: gene Location: 94884-96080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95085-95703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 085 -95 703 bp Feature: domain Description: GIIM Note: maturase Location: 95757-95967 bp Feature: domain Description: GIIM Note: maturase Location: 95 75 7-95 967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000203.1 (5183 bp)
Overview 1 RT 1: 2323-4825 bp Neighborhood of RT #1 [2323, 4833] VirD4 RVT-GII Feature: gene Location: 2323-3372 bp Feature: domain Description: VirD4 Location: 2578-3355 bp Feature: domain Description: VirD4 Location: 2578-3355 bp Feature: gene Location: 3874-4038 bp Feature: gene Location: 4123-4833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4438-4825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4438-4825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000206.1 (183831 bp)
Overview 1 RT 1: 146909-151324 bp Neighborhood of RT #1 [146909, 151326] FlgJ Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 146909-147853 bp Feature: domain Description: FlgJ Location: 146927-147398 bp Feature: domain Description: FlgJ Location: 146927 -147 398 bp Feature: gene Location: 147873-148313 bp Feature: domain Description: Phage_holin_4_1 Location: 147909-148278 bp Feature: domain Description: Phage_holin_4_1 Location: 147 909-14827 8 bp Feature: gene Location: 148387-149427 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148597-149212 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148597 -149212 bp Feature: gene Location: 149783-150172 bp Feature: domain Description: Avd_like Location: 149843-150146 bp Feature: domain Description: Avd_like Location: 149843-150146 bp Feature: gene Location: 150232-151326 bp Feature: domain Description: PHA00653 Location: 150325-151324 bp Feature: domain Description: PHA00653 Location: 150325-151324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000130.1 (215902 bp)
Overview 1 RT 1: 174155-176382 bp Neighborhood of RT #1 [174155, 176411] RVT-DGRs PHA00653 Avd_like Feature: gene Location: 174155-174328 bp Feature: gene Location: 174469-174663 bp Feature: gene Location: 174664-175734 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 174901-175522 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 174901-175522 bp Feature: gene Location: 175881-176021 bp Feature: domain Description: PHA00653 Location: 175887-176007 bp Feature: domain Description: PHA00653 Location: 1758 8 7-176007 bp Feature: gene Location: 176055-176411 bp Feature: domain Description: Avd_like Location: 176085-176382 bp Feature: domain Description: Avd_like Location: 17608 5-17638 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000083.1 (8154 bp)
Overview 1 RT 1: 1-1428 bp 2 RT 2: 5630-7804 bp Neighborhood of RT #1 [1, 1428] RVT-GII Neighborhood of RT #2 [5630, 7914] Maff2 TraG-D_C RVT-GII HNHc Feature: gene Location: 1-837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-805 bp Feature: gene Location: 1036-1284 bp Feature: gene Location: 1294-1428 bp Feature: gene Location: 5630-5845 bp Feature: domain Description: Maff2 Location: 5633-5840 bp Feature: domain Description: Maff2 Location: 5633-5840 bp Feature: gene Location: 5952-6695 bp Feature: domain Description: TraG-D_C Location: 6129-6480 bp Feature: domain Description: TraG-D_C Location: 6129 -6480 bp Feature: gene Location: 6826-7914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6847-7057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6847-7057 bp Feature: domain Description: HNHc Note: nucleases Location: 7636-7804 bp Feature: domain Description: HNHc Note: nucleases Location: 7636-7804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000120.1 (2514 bp)
Overview 1 RT 1: 279-2366 bp Neighborhood of RT #1 [279, 2401] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 279-545 bp Feature: gene Location: 584-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: domain Description: Intron_maturas2 Location: 1739-2045 bp Feature: domain Description: Intron_maturas2 Location: 1739-2045 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000134.1 (4042 bp)
Overview 1 RT 1: 3-2852 bp Neighborhood of RT #1 [3, 2852] RVT-GII Intron_maturas2 Feature: gene Location: 3-329 bp Feature: gene Location: 430-2241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-1528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-1528 bp Feature: domain Description: Intron_maturas2 Location: 1597-1906 bp Feature: domain Description: Intron_maturas2 Location: 1597-1906 bp Feature: gene Location: 2298-2456 bp Feature: gene Location: 2604-2852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000099.1 (104597 bp)
Overview 1 RT 1: 14817-17443 bp Neighborhood of RT #1 [14817, 17451] RVT-DGRs Avd_like Feature: gene Location: 14817-15188 bp Feature: gene Location: 15201-15557 bp Feature: gene Location: 15548-16687 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15770-16439 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15770-16439 bp Feature: gene Location: 16865-17170 bp Feature: gene Location: 17107-17451 bp Feature: domain Description: Avd_like Location: 17131-17443 bp Feature: domain Description: Avd_like Location: 17131-17443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CAAFUM010000140.1 (24033 bp)
Overview 1 RT 1: 3-3265 bp Neighborhood of RT #1 [3, 3285] RVT-GII HNHc Spr Feature: gene Location: 3-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-333 bp Feature: domain Description: HNHc Note: nucleases Location: 915-1053 bp Feature: domain Description: HNHc Note: nucleases Location: 915-1053 bp Feature: gene Location: 1345-1551 bp Feature: gene Location: 1564-3285 bp Feature: domain Description: Spr Location: 2920-3265 bp Feature: domain Description: Spr Location: 2920-3265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT