myRT

myRT report for GCA_900767095.1_SRS475703_19

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Seq: CAAFXY010000243.1 (9190 bp)
Overview 1 RT 1: 160-3946 bp Neighborhood of RT #1 [160, 3946] AAA_15 RVT-Retrons Feature: gene Location: 160-2199 bp Feature: domain Description: AAA_15 Location: 163-1129 bp Feature: domain Description: AAA_1 5 Location: 1 63-1 1 29 bp Feature: gene Location: 2292-3464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2526-3093 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2526-3093 bp Feature: gene Location: 3582-3710 bp Feature: gene Location: 3737-3946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons

Seq: CAAFXY010000377.1 (41163 bp)
Overview 1 RT 1: 13644-17190 bp Neighborhood of RT #1 [13644, 17288] RVT-DGRs Avd_like Feature: gene Location: 13644-13847 bp Feature: gene Location: 13862-15121 bp Feature: gene Location: 15142-16371 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15376-15991 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15376-15991 bp Feature: gene Location: 16518-16670 bp Feature: gene Location: 16713-17288 bp Feature: domain Description: Avd_like Location: 16920-17190 bp Feature: domain Description: Avd_like Location: 1692 0-17190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: CAAFXY010000292.1 (16913 bp)
Overview 1 RT 1: 1094-11841 bp Neighborhood of RT #1 [1094, 11879] YtxK COG4646 RVT-GII HNHc COG4646 KOG0390 MobC Feature: gene Location: 1094-1486 bp Feature: gene Location: 1568-6766 bp Feature: domain Description: YtxK Location: 3923-4673 bp Feature: domain Description: YtxK Location: 3 923 -4673 bp Feature: domain Description: COG4646 Location: 4733-6752 bp Feature: domain Description: COG4646 Location: 473 3 -6752 bp Feature: gene Location: 7466-9382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7790-8504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7790-8504 bp Feature: domain Description: HNHc Note: nucleases Location: 9134-9305 bp Feature: domain Description: HNHc Note: nucleases Location: 913 4-93 05 bp Feature: gene Location: 9610-11550 bp Feature: domain Description: COG4646 Location: 9613-10174 bp Feature: domain Description: COG4646 Location: 9613 -10174 bp Feature: domain Description: KOG0390 Location: 10447-10699 bp Feature: domain Description: KOG03 90 Location: 10447-10699 bp Feature: gene Location: 11547-11879 bp Feature: domain Description: MobC Location: 11742-11841 bp Feature: domain Description: MobC Location: 11742-11841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HNHc (smart00507), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), MobC (pfam05713)

Seq: CAAFXY010000169.1 (4500 bp)
Overview 1 RT 1: 207-2702 bp Neighborhood of RT #1 [207, 3022] RVT-DGRs NlpD Feature: gene Location: 207-458 bp Feature: gene Location: 388-864 bp Feature: gene Location: 1003-1785 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1024-1414 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1024 -14 14 bp Feature: gene Location: 1769-2083 bp Feature: gene Location: 2237-3022 bp Feature: domain Description: NlpD Location: 2537-2702 bp Feature: domain Description: NlpD Location: 2537-2702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, NlpD (COG0739)

Seq: CAAFXY010000327.1 (233261 bp)
Overview 1 RT 1: 84474-87485 bp Neighborhood of RT #1 [84474, 87485] NlpD PG_binding_1 RVT-DGRs Feature: gene Location: 84474-85199 bp Feature: domain Description: NlpD Location: 84528-84900 bp Feature: domain Description: NlpD Location: 845 28-84900 bp Feature: domain Description: PG_binding_1 Location: 85071-85185 bp Feature: domain Description: PG_binding_1 Location: 85 071-85 185 bp Feature: gene Location: 85505-85837 bp Feature: gene Location: 85834-87078 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86134-86719 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86134-86719 bp Feature: gene Location: 87104-87289 bp Feature: gene Location: 87312-87485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), PG_binding_1 (pfam01471), RVT-DGRs

Seq: CAAFXY010000135.1 (27746 bp)
Overview 1 RT 1: 3-3760 bp Neighborhood of RT #1 [3, 3804] SR_TndX_transposase RVT-GII T4SS-DNA_transf Feature: gene Location: 3-143 bp Feature: domain Description: SR_TndX_transposase Location: 27-141 bp Feature: domain Description: SR_TndX_transposase Location: 27-141 bp Feature: gene Location: 205-465 bp Feature: gene Location: 597-2504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-16 74 bp Feature: gene Location: 2559-3014 bp Feature: gene Location: 3136-3804 bp Feature: domain Description: T4SS-DNA_transf Location: 3433-3760 bp Feature: domain Description: T4SS-DNA_transf Location: 3433-376 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), RVT-GII, T4SS-DNA_transf (pfam02534)

Seq: CAAFXY010000267.1 (5719 bp)
Overview 1 RT 1: 205-2799 bp Neighborhood of RT #1 [205, 2799] RVT-UNC Feature: gene Location: 205-513 bp Feature: gene Location: 579-2123 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1017-1437 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1017 -1437 bp Feature: gene Location: 2221-2493 bp Feature: gene Location: 2542-2799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiK/RVT-UG15/RVT-UG12/RVT-UG7(RVT-UNC)