myRT

myRT report for GCA_900767235.1_SRS475931_23

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Seq: CAAFYL010000534.1 (39781 bp)
Overview 1 RT 1: 34728-37715 bp Neighborhood of RT #1 [34728, 37975] RVT-Retrons AAA_17 COG4933 Acetyltransf_10 Feature: gene Location: 34728-35264 bp Feature: gene Location: 35286-35468 bp Feature: gene Location: 35477-35992 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35483-35930 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35483-35930 bp Feature: gene Location: 36377-37285 bp Feature: domain Description: AAA_17 Location: 36395-36743 bp Feature: domain Description: AAA_1 7 Location: 36395-36743 bp Feature: domain Description: COG4933 Location: 36914-37256 bp Feature: domain Description: COG4933 Location: 3691 4-37256 bp Feature: gene Location: 37340-37975 bp Feature: domain Description: Acetyltransf_10 Location: 37520-37715 bp Feature: domain Description: Acetyltransf_1 0 Location: 37520-3771 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_17 (pfam13207), COG4933 (Predicted transcriptional regulator, contains an HTH and PUA-like domains ), Acetyltransf_10 (pfam13673)

Seq: CAAFYL010000541.1 (3268 bp)
Overview 1 RT 1: 3-3109 bp Neighborhood of RT #1 [3, 3129] RVT-AbiP2 COG1373 Feature: gene Location: 3-263 bp Feature: gene Location: 288-1811 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 717-1173 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 717-1173 bp Feature: gene Location: 1870-3129 bp Feature: domain Description: COG1373 Location: 1876-3109 bp Feature: domain Description: COG1373 Location: 1876-3109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: CAAFYL010000740.1 (16965 bp)
Overview 1 RT 1: 102-4396 bp Neighborhood of RT #1 [102, 4396] IS285 HTH_Tnp_1 InsE PHA02517 RVT-Retrons Feature: gene Location: 102-323 bp Feature: domain Description: IS285 Location: 108-318 bp Feature: domain Description: IS285 Location: 108-3 18 bp Feature: gene Location: 390-1802 bp Feature: domain Description: HTH_Tnp_1 Location: 396-510 bp Feature: domain Description: HTH_Tnp_1 Location: 3 96-510 bp Feature: domain Description: InsE Location: 609-906 bp Feature: domain Description: InsE Location: 609-906 bp Feature: domain Description: PHA02517 Location: 1011-1776 bp Feature: domain Description: PHA02517 Location: 1011-1776 bp Feature: gene Location: 1885-2928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2110-2665 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2110-2665 bp Feature: gene Location: 3193-3495 bp Feature: gene Location: 3500-4396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), HTH_Tnp_1 (pfam01527), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons

Seq: CAAFYL010000047.1 (23042 bp)
Overview 1 RT 1: 3780-7328 bp Neighborhood of RT #1 [3780, 7328] RVT-DGRs Feature: gene Location: 3780-3911 bp Feature: gene Location: 3956-4324 bp Feature: gene Location: 4272-5402 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4497-5145 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 4 97-514 5 bp Feature: gene Location: 5548-5688 bp Feature: gene Location: 5772-7328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAFYL010000164.1 (5376 bp)
Overview 1 RT 1: 1122-5221 bp Neighborhood of RT #1 [1122, 5373] VirD4 RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 1122-2378 bp Feature: domain Description: VirD4 Location: 1335-2367 bp Feature: domain Description: VirD4 Location: 1335 -2367 bp Feature: gene Location: 2718-2861 bp Feature: gene Location: 2968-4779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3232-4063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3232-4063 bp Feature: domain Description: Intron_maturas2 Location: 4132-4462 bp Feature: domain Description: Intron_maturas2 Location: 4132-4462 bp Feature: gene Location: 4936-5373 bp Feature: domain Description: TraG-D_C Location: 4939-5221 bp Feature: domain Description: TraG-D_C Location: 4939-5 221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: CAAFYL010000025.1 (1565 bp)
Overview 1 RT 1: 1-1533 bp Neighborhood of RT #1 [1, 1562] RVT-GII Feature: gene Location: 1-297 bp Feature: gene Location: 774-1562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAFYL010000616.1 (4309 bp)
Overview 1 RT 1: 3-3512 bp Neighborhood of RT #1 [3, 3583] HTH_XRE RVT-UG2 CxxCG_CxxCG_HTH GepA Feature: gene Location: 3-260 bp Feature: gene Location: 414-740 bp Feature: domain Description: HTH_XRE Location: 447-618 bp Feature: domain Description: HTH_XRE Location: 447 -618 bp Feature: gene Location: 796-2112 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 991-1825 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 991-1825 bp Feature: gene Location: 2279-2503 bp Feature: gene Location: 2513-3583 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 2612-2987 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 2612-2987 bp Feature: domain Description: GepA Location: 3125-3512 bp Feature: domain Description: GepA Location: 3125-3512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG2, CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600)

Seq: CAAFYL010000463.1 (8414 bp)
Overview 1 RT 1: 136-1938 bp Neighborhood of RT #1 [136, 1979] RVT-DGRs Avd_like Feature: gene Location: 136-1218 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 343-967 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 343-967 bp Feature: gene Location: 1333-1530 bp Feature: gene Location: 1587-1979 bp Feature: domain Description: Avd_like Location: 1620-1938 bp Feature: domain Description: Avd_like Location: 1620-1938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: CAAFYL010000114.1 (4470 bp)
Overview 1 RT 1: 2-3740 bp Neighborhood of RT #1 [2, 3946] RVT-GII Intron_maturas2 HNHc Phage_portal S14_ClpP_1 Feature: gene Location: 2-166 bp Feature: gene Location: 595-2400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1672 bp Feature: domain Description: Intron_maturas2 Location: 1753-2035 bp Feature: domain Description: Intron_maturas2 Location: 1753-2035 bp Feature: domain Description: HNHc Note: nucleases Location: 2215-2362 bp Feature: domain Description: HNHc Note: nucleases Location: 2215-2362 bp Feature: gene Location: 2476-3216 bp Feature: domain Description: Phage_portal Location: 2506-3091 bp Feature: domain Description: Phage_portal Location: 2506-309 1 bp Feature: gene Location: 3206-3946 bp Feature: domain Description: S14_ClpP_1 Location: 3263-3740 bp Feature: domain Description: S14_ClpP_1 Location: 3263-3740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Phage_portal (pfam04860), S14_ClpP_1 (cd07016)