myRT

myRT report for GCA_900768355.1_SRS476101_1

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Seq: CAAGCT010000697.1 (40621 bp)
Overview 1 RT 1: 34027-39600 bp Neighborhood of RT #1 [34027, 39671] PI-PLCc_eta RVT-DGRs Dam Feature: gene Location: 34027-34929 bp Feature: domain Description: PI-PLCc_eta Location: 34126-34702 bp Feature: domain Description: PI-PLCc_eta Location: 341 26-34702 bp Feature: gene Location: 34943-36379 bp Feature: gene Location: 36875-38218 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37085-37676 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37085-37676 bp Feature: gene Location: 38232-38642 bp Feature: gene Location: 38829-39671 bp Feature: domain Description: Dam Location: 38832-39600 bp Feature: domain Description: Dam Location: 38832-39600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PI-PLCc_eta (cd08594), RVT-DGRs, Dam (pfam05869)

Seq: CAAGCT010000415.1 (2728 bp)
Overview 1 RT 1: 193-2727 bp Neighborhood of RT #1 [193, 2726] RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 193-402 bp Feature: gene Location: 684-2339 bp Feature: domain Description: RVT_N Location: 741-978 bp Feature: domain Description: RVT_N Location: 741-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 9-1677 bp Feature: domain Description: GIIM Note: maturase Location: 1734-1965 bp Feature: domain Description: GIIM Note: maturase Location: 1734-1965 bp Feature: gene Location: 2336-2578 bp Feature: domain Description: DUF4134 Location: 2483-2573 bp Feature: domain Description: DUF4134 Location: 2 483-2 573 bp Feature: gene Location: 2589-2726 bp Feature: domain Description: DUF4133 Location: 2607-2727 bp Feature: domain Description: DUF4133 Location: 2 607-2 72 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572), DUF4133 (pfam13571)

Seq: CAAGCT010000551.1 (3348 bp)
Overview 1 RT 1: 2-3346 bp Neighborhood of RT #1 [2, 3345] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 2-607 bp Feature: domain Description: Bac_Flav_CT_G Location: 5-590 bp Feature: domain Description: Bac_Flav_CT_G Location: 5-590 bp Feature: gene Location: 1157-2968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1421-2243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1421-2243 bp Feature: domain Description: Intron_maturas2 Location: 2312-2669 bp Feature: domain Description: Intron_maturas2 Location: 23 12-2669 bp Feature: domain Description: HNHc Note: nucleases Location: 2792-2939 bp Feature: domain Description: HNHc Note: nucleases Location: 2792-293 9 bp Feature: gene Location: 3049-3345 bp Feature: domain Description: Bac_Flav_CT_G Location: 3079-3346 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 079-3 3 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAGCT010000759.1 (1708 bp)
Overview 1 RT 1: 79-1359 bp Neighborhood of RT #1 [79, 1706] RVT-GII Feature: gene Location: 79-300 bp Feature: gene Location: 414-1706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669-1359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669-1359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAGCT010000539.1 (1851 bp)
Overview 1 RT 1: 3-1850 bp Neighborhood of RT #1 [3, 1850] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-744 bp Feature: domain Description: Intron_maturas2 Location: 828-1146 bp Feature: domain Description: Intron_maturas2 Location: 828-1146 bp Feature: domain Description: HNHc Note: nucleases Location: 1284-1437 bp Feature: domain Description: HNHc Note: nucleases Location: 1284-1437 bp Feature: gene Location: 1602-1850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAGCT010000595.1 (2897 bp)
Overview 1 RT 1: 2-2875 bp Neighborhood of RT #1 [2, 2895] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 2-346 bp Feature: domain Description: Bac_Flav_CT_G Location: 131-347 bp Feature: domain Description: Bac_Flav_CT_G Location: 131-347 bp Feature: gene Location: 336-2144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 600-1422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 00-1422 bp Feature: domain Description: Intron_maturas2 Location: 1491-1803 bp Feature: domain Description: Intron_maturas2 Location: 1491-1803 bp Feature: domain Description: HNHc Note: nucleases Location: 1977-2118 bp Feature: domain Description: HNHc Note: nucleases Location: 1977-2118 bp Feature: gene Location: 2152-2652 bp Feature: gene Location: 2710-2895 bp Feature: domain Description: Bac_Flav_CT_G Location: 2713-2875 bp Feature: domain Description: Bac_Flav_CT_G Location: 2713-2875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAGCT010000353.1 (14752 bp)
Overview 1 RT 1: 488-3891 bp Neighborhood of RT #1 [488, 3983] Upp RVT-Retrons KOG4674 Feature: gene Location: 488-1312 bp Feature: domain Description: Upp Location: 911-1112 bp Feature: domain Description: Upp Location: 911-1112 bp Feature: gene Location: 1302-1622 bp Feature: gene Location: 1839-2876 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2064-2628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2064-2628 bp Feature: gene Location: 3011-3397 bp Feature: gene Location: 3555-3983 bp Feature: domain Description: KOG4674 Location: 3579-3891 bp Feature: domain Description: KOG467 4 Location: 357 9-3891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Upp (COG0035), RVT-Retrons, KOG4674 (KOG4674, Uncharacterized conserved coiled-coil protein )

Seq: CAAGCT010000794.1 (4044 bp)
Overview 1 RT 1: 1334-3693 bp Neighborhood of RT #1 [1334, 4043] ZntA CsoR-like_DUF156_3 RVT-GII Feature: gene Location: 1334-2065 bp Feature: domain Description: ZntA Location: 1439-2051 bp Feature: domain Description: ZntA Location: 1439-2051 bp Feature: gene Location: 2202-2474 bp Feature: domain Description: CsoR-like_DUF156_3 Location: 2220-2472 bp Feature: domain Description: CsoR-like_DUF156_3 Location: 2220-2472 bp Feature: gene Location: 2679-4043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3003-3693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3003-3693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZntA (COG2217), CsoR-like_DUF156_3 (cd10160), RVT-GII

Seq: CAAGCT010000437.1 (15065 bp)
Overview 1 RT 1: 567-3395 bp Neighborhood of RT #1 [567, 3395] MutS_I Avd_like RVT-DGRs Feature: gene Location: 567-1016 bp Feature: domain Description: MutS_I Location: 597-792 bp Feature: domain Description: MutS_I Location: 59 7-79 2 bp Feature: gene Location: 997-1353 bp Feature: domain Description: Avd_like Location: 1033-1330 bp Feature: domain Description: Avd_like Location: 1033-1330 bp Feature: gene Location: 1760-2707 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1970-2558 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19 70-2558 bp Feature: gene Location: 2710-2910 bp Feature: gene Location: 3132-3395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutS_I (pfam01624), Avd_like (cd16376), RVT-DGRs

Seq: CAAGCT010000476.1 (4074 bp)
Overview 1 RT 1: 3-4069 bp Neighborhood of RT #1 [3, 4071] SIR2_2 RVT-GII GIIM rplQ Feature: gene Location: 3-1568 bp Feature: domain Description: SIR2_2 Location: 345-750 bp Feature: domain Description: SIR2_2 Location: 345-750 bp Feature: gene Location: 1900-3318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251-2872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251-2872 bp Feature: domain Description: GIIM Note: maturase Location: 2929-3154 bp Feature: domain Description: GIIM Note: maturase Location: 2929-3154 bp Feature: gene Location: 3775-4071 bp Feature: domain Description: rplQ Location: 3802-4069 bp Feature: domain Description: rplQ Location: 3802-4069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), RVT-GII, GIIM (pfam08388), rplQ (PRK05591)

Seq: CAAGCT010000100.1 (4703 bp)
Overview 1 RT 1: 3-3634 bp Neighborhood of RT #1 [3, 4701] Mrr_cat dnaG RVT-UG10 Feature: gene Location: 3-1109 bp Feature: domain Description: Mrr_cat Location: 705-1002 bp Feature: domain Description: Mrr_cat Location: 705-1002 bp Feature: gene Location: 1150-4701 bp Feature: domain Description: dnaG Location: 1186-2515 bp Feature: domain Description: dnaG Location: 11 86-2515 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 2989-3634 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 2989-3634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), dnaG (TIGR01391), RVT-UG10

Seq: CAAGCT010000263.1 (2856 bp)
Overview 1 RT 1: 3-2566 bp Neighborhood of RT #1 [3, 2643] RVT-GII HNHc Feature: gene Location: 3-293 bp Feature: gene Location: 727-2643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1051-1765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1051-1765 bp Feature: domain Description: HNHc Note: nucleases Location: 2395-2566 bp Feature: domain Description: HNHc Note: nucleases Location: 2395-2566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: CAAGCT010000080.1 (2717 bp)
Overview 1 RT 1: 2-2402 bp Neighborhood of RT #1 [2, 2402] RVT-GII Feature: gene Location: 2-169 bp Feature: gene Location: 179-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1220 bp Feature: gene Location: 2256-2402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAGCT010000637.1 (3267 bp)
Overview 1 RT 1: 2-3265 bp Neighborhood of RT #1 [2, 3265] RVT_N RVT-GII YkfC Feature: gene Location: 2-688 bp Feature: gene Location: 1294-3030 bp Feature: domain Description: RVT_N Location: 1417-1660 bp Feature: domain Description: RVT_N Location: 14 17-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705-2353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705-2353 bp Feature: domain Description: YkfC Location: 2563-2653 bp Feature: domain Description: YkfC Location: 2563-2653 bp Feature: gene Location: 2984-3265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: CAAGCT010000281.1 (3931 bp)
Overview 1 RT 1: 3-3927 bp Neighborhood of RT #1 [3, 3929] T4SS-DNA_transf RVT-GII RVT-GII TraG-D_C Feature: gene Location: 3-1001 bp Feature: domain Description: T4SS-DNA_transf Location: 90-945 bp Feature: domain Description: T4SS-DNA_transf Location: 90-945 bp Feature: gene Location: 1759-2484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068-2455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068-2455 bp Feature: gene Location: 2520-3668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2607-2823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2607-2823 bp Feature: gene Location: 3678-3929 bp Feature: domain Description: TraG-D_C Location: 3771-3927 bp Feature: domain Description: TraG-D_C Location: 3771-3927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, TraG-D_C (pfam12696)

Seq: CAAGCT010000131.1 (4754 bp)
Overview 1 RT 1: 64-3784 bp Neighborhood of RT #1 [64, 4620] RVT-GII Intron_maturas2 HNHc RVT-GII Feature: gene Location: 64-1854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-1147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-1147 bp Feature: domain Description: Intron_maturas2 Location: 1324-1516 bp Feature: domain Description: Intron_maturas2 Location: 1324-1516 bp Feature: domain Description: HNHc Note: nucleases Location: 1690-1834 bp Feature: domain Description: HNHc Note: nucleases Location: 16 90-1834 bp Feature: gene Location: 1926-2084 bp Feature: gene Location: 2710-4620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3040-3784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3040-3784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAGCT010000746.1 (6107 bp)
Overview 1 RT 1: 1-5012 bp Neighborhood of RT #1 [1, 6106] ParAB_family RVT-UG3 RVT-UG8 Relaxase Feature: gene Location: 1-573 bp Feature: domain Description: ParAB_family Location: 49-520 bp Feature: domain Description: ParAB_family Location: 49-520 bp Feature: gene Location: 929-2332 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1364-1880 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1364-1880 bp Feature: gene Location: 2329-4584 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2932-3379 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2932-3379 bp Feature: gene Location: 4748-6106 bp Feature: domain Description: Relaxase Location: 4757-5012 bp Feature: domain Description: Relaxase Location: 4757-5012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParAB_family (cd02042), RVT-UG3, RVT-UG8, Relaxase (pfam03432)

Seq: CAAGCT010000494.1 (3897 bp)
Overview 1 RT 1: 1-3894 bp Neighborhood of RT #1 [1, 3894] AE_Prim_S_like RVT-UG10 Feature: gene Location: 1-996 bp Feature: gene Location: 993-3482 bp Feature: domain Description: AE_Prim_S_like Location: 1134-1545 bp Feature: domain Description: AE_Prim_S_like Location: 1134-1545 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 2322-2943 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 2322-2943 bp Feature: gene Location: 3493-3894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AE_Prim_S_like (cl01287), RVT-UG10

Seq: CAAGCT010000538.1 (7892 bp)
Overview 1 RT 1: 5136-7830 bp Neighborhood of RT #1 [5136, 7830] RuMP_HxlB RVT-GII Feature: gene Location: 5136-5705 bp Feature: domain Description: RuMP_HxlB Location: 5172-5703 bp Feature: domain Description: RuMP_HxlB Location: 5172-5703 bp Feature: gene Location: 5758-5970 bp Feature: gene Location: 6481-7623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6799-7423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6799-7423 bp Feature: gene Location: 7624-7830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RuMP_HxlB (TIGR03127), RVT-GII

Seq: CAAGCT010000371.1 (2310 bp)
Overview 1 RT 1: 2-2304 bp Neighborhood of RT #1 [2, 2309] RVT-GII Maff2 Feature: gene Location: 2-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335-1073 bp Feature: gene Location: 2175-2309 bp Feature: domain Description: Maff2 Location: 2181-2304 bp Feature: domain Description: Maff2 Location: 2181-2304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Maff2 (pfam12750)