myRT

myRT report for GCA_900770345.1_SRS476292_7

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Seq: CAAGKF010000211.1 (10463 bp)
Overview 1 RT 1: 4204-7735 bp Neighborhood of RT #1 [4204, 7818] Acetyltransf_1 RVT-GII GIIM HTH_Tnp_1 TnpB_IS66 Feature: gene Location: 4204-4656 bp Feature: domain Description: Acetyltransf_1 Location: 4348-4621 bp Feature: domain Description: Acetyltransf_1 Location: 4348-4621 bp Feature: gene Location: 4846-5058 bp Feature: gene Location: 5153-6451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5411-6101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 1 -61 01 bp Feature: domain Description: GIIM Note: maturase Location: 6185-6377 bp Feature: domain Description: GIIM Note: maturase Location: 61 85-6377 bp Feature: gene Location: 6992-7417 bp Feature: domain Description: HTH_Tnp_1 Location: 7019-7199 bp Feature: domain Description: HTH_Tnp_1 Location: 701 9-71 99 bp Feature: gene Location: 7411-7818 bp Feature: domain Description: TnpB_IS66 Location: 7441-7735 bp Feature: domain Description: TnpB_IS66 Location: 7441 -7735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717)

Seq: CAAGKF010000273.1 (30381 bp)
Overview 1 RT 1: 83-1526 bp Neighborhood of RT #1 [83, 1526] RVT-GII Feature: gene Location: 83-778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-72 8 bp Feature: gene Location: 780-1238 bp Feature: gene Location: 1353-1526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAGKF010000079.1 (17859 bp)
Overview 1 RT 1: 16683-17723 bp Neighborhood of RT #1 [16683, 17773] DUF5372 RVT-GII Feature: gene Location: 16683-17042 bp Feature: gene Location: 17100-17336 bp Feature: domain Description: DUF5372 Location: 17118-17289 bp Feature: domain Description: DUF53 72 Location: 17118-17289 bp Feature: gene Location: 17321-17773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17369-17723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173 69-17723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII

Seq: CAAGKF010000141.1 (18384 bp)
Overview 1 RT 1: 4682-9757 bp Neighborhood of RT #1 [4682, 10404] Y_phosphatase3 Cas2_I_II_III RVT-CRISPR cas1_HMARI Cas6 TIGR03986 Feature: gene Location: 4682-5179 bp Feature: domain Description: Y_phosphatase3 Location: 4694-5168 bp Feature: domain Description: Y_phosphatase3 Location: 4 694 -5168 bp Feature: gene Location: 5188-5448 bp Feature: domain Description: Cas2_I_II_III Location: 5197-5422 bp Feature: domain Description: Cas2_I_II_III Location: 5197-54 22 bp Feature: gene Location: 5454-7454 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5751-6330 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5751-6330 bp Feature: domain Description: cas1_HMARI Location: 6465-7443 bp Feature: domain Description: cas1_HMARI Location: 64 65-74 4 3 bp Feature: gene Location: 7493-8206 bp Feature: domain Description: Cas6 Location: 7496-8198 bp Feature: domain Description: Cas6 Location: 74 96-8198 bp Feature: gene Location: 8218-10404 bp Feature: domain Description: TIGR03986 Location: 8242-9757 bp Feature: domain Description: TIGR03986 Location: 824 2-9757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y_phosphatase3 (pfam13350), Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641), Cas6 (pfam09559), TIGR03986 (CRISPR-associated protein)

Seq: CAAGKF010000093.1 (2863 bp)
Overview 1 RT 1: 332-2580 bp Neighborhood of RT #1 [332, 2861] RVT-GII GIIM TTHA1429-like_MBL-fold Feature: gene Location: 332-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1301 bp Feature: domain Description: GIIM Note: maturase Location: 1358-1589 bp Feature: domain Description: GIIM Note: maturase Location: 135 8-15 89 bp Feature: gene Location: 2205-2861 bp Feature: domain Description: TTHA1429-like_MBL-fold Location: 2241-2580 bp Feature: domain Description: TTHA1429-like_MBL-fold Location: 2241-25 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TTHA1429-like_MBL-fold (cd07725)

Seq: CAAGKF010000020.1 (32480 bp)
Overview 1 RT 1: 6052-11733 bp Neighborhood of RT #1 [6052, 11753] YesN YesN YesM RVT-GII GIIM PBP2_TRAP_Siap_TeaA_like DctM Feature: gene Location: 6052-6795 bp Feature: domain Description: YesN Location: 6058-6421 bp Feature: domain Description: YesN Location: 6 058-6 421 bp Feature: domain Description: YesN Location: 6472-6775 bp Feature: domain Description: YesN Location: 6 472-6 775 bp Feature: gene Location: 6770-8062 bp Feature: domain Description: YesM Location: 7397-8030 bp Feature: domain Description: YesM Location: 7397-8030 bp Feature: gene Location: 8181-9497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8442-9135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8442-9135 bp Feature: domain Description: GIIM Note: maturase Location: 9198-9405 bp Feature: domain Description: GIIM Note: maturase Location: 9198-9405 bp Feature: gene Location: 10187-11281 bp Feature: domain Description: PBP2_TRAP_Siap_TeaA_like Location: 10379-11267 bp Feature: domain Description: PBP2_TRAP_Siap_TeaA_like Location: 10379-1126 7 bp Feature: gene Location: 11301-11753 bp Feature: domain Description: DctM Location: 11316-11733 bp Feature: domain Description: DctM Location: 11316 -11733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PBP2_TRAP_Siap_TeaA_like (cd13603), DctM (pfam06808)

Seq: CAAGKF010000271.1 (28804 bp)
Overview 1 RT 1: 22976-28803 bp Neighborhood of RT #1 [22976, 28803] PRK05298 COG3547 Transposase_20 RVT_N RVT-GII GIIM Feature: gene Location: 22976-24958 bp Feature: domain Description: PRK05298 Location: 22982-24947 bp Feature: domain Description: PRK05298 Location: 22982-24947 bp Feature: gene Location: 25504-26502 bp Feature: domain Description: COG3547 Location: 25522-25927 bp Feature: domain Description: COG3547 Location: 25522-25927 bp Feature: domain Description: Transposase_20 Location: 26086-26335 bp Feature: domain Description: Transposase_20 Location: 26086-26335 bp Feature: gene Location: 26650-28152 bp Feature: domain Description: RVT_N Location: 26716-26959 bp Feature: domain Description: RVT_N Location: 267 16-26959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27004-27655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 004-27 655 bp Feature: domain Description: GIIM Note: maturase Location: 27709-27940 bp Feature: domain Description: GIIM Note: maturase Location: 27 7 09-27 940 bp Feature: gene Location: 28666-28803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05298 (excinuclease ABC subunit UvrB), COG3547 (Transposase ), Transposase_20 (pfam02371), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)