myRT

myRT report for GCA_900770365.1_SRS476296_47

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Seq: CAAGKH010000028.1 (2642 bp)
Overview 1 RT 1: 207-2384 bp Neighborhood of RT #1 [207, 2419] RVT-GII PRK09453 Feature: gene Location: 207-377 bp Feature: gene Location: 385-1770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727-1 390 bp Feature: gene Location: 1874-2419 bp Feature: domain Description: PRK09453 Location: 1877-2384 bp Feature: domain Description: PRK09453 Location: 1 877-2384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK09453 (phosphodiesterase; Provisional)

Seq: CAAGKH010000479.1 (3797 bp)
Overview 1 RT 1: 2-3795 bp Neighborhood of RT #1 [2, 3795] BcsQ ParB_N_like RVT-GII Intron_maturas2 Feature: gene Location: 2-589 bp Feature: domain Description: BcsQ Location: 23-548 bp Feature: domain Description: BcsQ Location: 2 3-548 bp Feature: gene Location: 546-917 bp Feature: domain Description: ParB_N_like Location: 654-906 bp Feature: domain Description: ParB_N_like Location: 654-906 bp Feature: gene Location: 1570-3393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1852-2677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1852 -2 677 bp Feature: domain Description: Intron_maturas2 Location: 2752-3058 bp Feature: domain Description: Intron_maturas2 Location: 2 752 -3058 bp Feature: gene Location: 3562-3795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), ParB_N_like (cd16411), RVT-GII, Intron_maturas2 (pfam01348)

Seq: CAAGKH010000467.1 (1347 bp)
Overview 1 RT 1: 2-1343 bp Neighborhood of RT #1 [2, 1345] PHA02517 RVT-GII Feature: gene Location: 2-214 bp Feature: domain Description: PHA02517 Location: 20-215 bp Feature: domain Description: PHA02517 Location: 20-215 bp Feature: gene Location: 1019-1345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1259-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1259-13 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: CAAGKH010000270.1 (4262 bp)
Overview 1 RT 1: 3-4200 bp Neighborhood of RT #1 [3, 4259] T4SS-DNA_transf RVT-GII TraG_VirD4 Feature: gene Location: 3-302 bp Feature: gene Location: 444-1373 bp Feature: domain Description: T4SS-DNA_transf Location: 510-1347 bp Feature: domain Description: T4 SS-DNA_transf Location: 510-134 7 bp Feature: gene Location: 1470-3347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1788-2529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1788-2529 bp Feature: gene Location: 3499-3819 bp Feature: gene Location: 3969-4259 bp Feature: domain Description: TraG_VirD4 Location: 4002-4200 bp Feature: domain Description: TraG_VirD4 Location: 4 002-4 200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, TraG_VirD4

Seq: CAAGKH010000059.1 (6565 bp)
Overview 1 RT 1: 158-5634 bp Neighborhood of RT #1 [158, 6017] AbiH RVT-UG15 DDE_Tnp_1 Feature: gene Location: 158-559 bp Feature: gene Location: 798-2402 bp Feature: domain Description: AbiH Location: 1038-1824 bp Feature: domain Description: AbiH Location: 1038-1824 bp Feature: gene Location: 2586-4088 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 3012-3411 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 3012-3411 bp Feature: gene Location: 4152-6017 bp Feature: domain Description: DDE_Tnp_1 Location: 4833-5634 bp Feature: domain Description: DDE_Tnp_1 Location: 4833-5 634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiH (pfam14253), RVT-UG15, DDE_Tnp_1 (pfam01609)

Seq: CAAGKH010000094.1 (2528 bp)
Overview 1 RT 1: 2-1756 bp Neighborhood of RT #1 [2, 1995] YceG RVT-GII GIIM GIIM Feature: gene Location: 2-424 bp Feature: domain Description: YceG Location: 32-410 bp Feature: domain Description: YceG Location: 32-410 bp Feature: gene Location: 559-1995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799-1420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799-1420 bp Feature: domain Description: GIIM Note: maturase Location: 1492-1621 bp Feature: domain Description: GIIM Note: maturase Location: 1492-16 21 bp Feature: domain Description: GIIM Note: maturase Location: 1669-1756 bp Feature: domain Description: GIIM Note: maturase Location: 16 6 9-1756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YceG (pfam02618), RVT-GII, GIIM (pfam08388)

Seq: CAAGKH010000103.1 (1686 bp)
Overview 1 RT 1: 165-1612 bp Neighborhood of RT #1 [165, 1683] Acetyltransf_10 RVT-GII GIIM Feature: gene Location: 165-632 bp Feature: domain Description: Acetyltransf_10 Location: 297-594 bp Feature: domain Description: Acetyltransf_10 Location: 297 -594 bp Feature: gene Location: 757-1683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 63-1333 bp Feature: domain Description: GIIM Note: maturase Location: 1393-1612 bp Feature: domain Description: GIIM Note: maturase Location: 1393-1612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RVT-GII, GIIM (pfam08388)

Seq: CAAGKH010000093.1 (3740 bp)
Overview 1 RT 1: 1-3496 bp Neighborhood of RT #1 [1, 3496] RVT-GII GIIM RaiA Ribosom_S30AE_C Feature: gene Location: 1-354 bp Feature: gene Location: 607-1998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1546 bp Feature: domain Description: GIIM Note: maturase Location: 1603-1813 bp Feature: domain Description: GIIM Note: maturase Location: 1603-18 13 bp Feature: gene Location: 2523-3059 bp Feature: domain Description: RaiA Location: 2535-2847 bp Feature: domain Description: RaiA Location: 2535-28 47 bp Feature: domain Description: Ribosom_S30AE_C Location: 2877-3042 bp Feature: domain Description: Ribosom_S30AE_C Location: 28 77-3042 bp Feature: gene Location: 3338-3496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RaiA (COG1544), Ribosom_S30AE_C (pfam16321)

Seq: CAAGKH010000212.1 (82008 bp)
Overview 1 RT 1: 64790-68559 bp Neighborhood of RT #1 [64790, 68559] RVT-UG26 Feature: gene Location: 64790-65029 bp Feature: gene Location: 64992-65276 bp Feature: gene Location: 65411-66607 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 65615-66221 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 65615-66221 bp Feature: gene Location: 66842-67459 bp Feature: gene Location: 67651-68559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26

Seq: CAAGKH010000162.1 (34835 bp)
Overview 1 RT 1: 32233-34296 bp Neighborhood of RT #1 [32233, 34460] RVT-GII GIIM Feature: gene Location: 32233-32655 bp Feature: gene Location: 33050-33193 bp Feature: gene Location: 33180-34460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33390-34005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33390-34005 bp Feature: domain Description: GIIM Note: maturase Location: 34068-34296 bp Feature: domain Description: GIIM Note: maturase Location: 34068-34296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGKH010000203.1 (24892 bp)
Overview 1 RT 1: 91-2506 bp Neighborhood of RT #1 [91, 2506] RVT-GII GIIM HTH_36 Feature: gene Location: 91-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-916 bp Feature: domain Description: GIIM Note: maturase Location: 976-1207 bp Feature: domain Description: GIIM Note: maturase Location: 976-1207 bp Feature: gene Location: 1659-2240 bp Feature: domain Description: HTH_36 Location: 1731-1896 bp Feature: domain Description: HTH_36 Location: 1731-1896 bp Feature: gene Location: 2294-2506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_36 (pfam13730)

Seq: CAAGKH010000111.1 (40531 bp)
Overview 1 RT 1: 33388-37387 bp Neighborhood of RT #1 [33388, 37387] RVT-DGRs Phage_XkdX Feature: gene Location: 33388-33801 bp Feature: gene Location: 33817-35073 bp Feature: gene Location: 35420-36781 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35675-36314 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35675-36314 bp Feature: gene Location: 36954-37172 bp Feature: domain Description: Phage_XkdX Location: 37020-37155 bp Feature: domain Description: Phage_XkdX Location: 37020-37155 bp Feature: gene Location: 37172-37387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: CAAGKH010000435.1 (1019 bp)
Overview 1 RT 1: 212-1015 bp Neighborhood of RT #1 [212, 1017] group_II_RT_mat RVT-GII Feature: gene Location: 212-454 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 302-431 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 302-431 bp Feature: gene Location: 529-1017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532-1015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: CAAGKH010000348.1 (2640 bp)
Overview 1 RT 1: 1-2633 bp Neighborhood of RT #1 [1, 2638] RVT-GII HNHc Maff2 Feature: gene Location: 1-1764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-1066 bp Feature: domain Description: HNHc Note: nucleases Location: 1603-1765 bp Feature: domain Description: HNHc Note: nucleases Location: 1603-1765 bp Feature: gene Location: 2180-2470 bp Feature: gene Location: 2480-2638 bp Feature: domain Description: Maff2 Location: 2510-2633 bp Feature: domain Description: Maff2 Location: 2510-2633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Maff2 (pfam12750)

Seq: CAAGKH010000421.1 (5151 bp)
Overview 1 RT 1: 1565-4980 bp Neighborhood of RT #1 [1565, 5150] COG2510 COG2510 COG3666 DDE_Tnp_1_6 RVT-GII GIIM Feature: gene Location: 1565-2437 bp Feature: domain Description: COG2510 Location: 1571-1973 bp Feature: domain Description: COG2510 Location: 15 71-1973 bp Feature: domain Description: COG2510 Location: 2024-2429 bp Feature: domain Description: COG2510 Location: 2024-2429 bp Feature: gene Location: 2676-4091 bp Feature: domain Description: COG3666 Location: 2718-3138 bp Feature: domain Description: COG3666 Location: 2718-3138 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3687-4038 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3687-4038 bp Feature: gene Location: 4254-5150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4263-4692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4263-4692 bp Feature: domain Description: GIIM Note: maturase Location: 4752-4980 bp Feature: domain Description: GIIM Note: maturase Location: 4752-4980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2510 (Uncharacterized membrane protein ), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388)

Seq: CAAGKH010000331.1 (9171 bp)
Overview 1 RT 1: 98-3369 bp Neighborhood of RT #1 [98, 3605] RVT-Retrons WG_beta_rep WG_beta_rep Feature: gene Location: 98-751 bp Feature: gene Location: 757-2256 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 955-1555 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 955-1555 bp Feature: gene Location: 2436-2684 bp Feature: gene Location: 2730-3605 bp Feature: domain Description: WG_beta_rep Location: 3090-3165 bp Feature: domain Description: WG_beta_rep Location: 3090-316 5 bp Feature: domain Description: WG_beta_rep Location: 3294-3369 bp Feature: domain Description: WG_beta_rep Location: 3294-3369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, WG_beta_rep (pfam14903)

Seq: CAAGKH010000419.1 (2515 bp)
Overview 1 RT 1: 477-2355 bp Neighborhood of RT #1 [477, 2414] RVT-GII GIIM Feature: gene Location: 477-632 bp Feature: gene Location: 839-1033 bp Feature: gene Location: 1125-2414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416-2049 bp Feature: domain Description: GIIM Note: maturase Location: 2130-2355 bp Feature: domain Description: GIIM Note: maturase Location: 2130-2355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGKH010000005.1 (4474 bp)
Overview 1 RT 1: 3-4168 bp Neighborhood of RT #1 [3, 4269] RVT-GII Intron_maturas2 HNHc PrgI Feature: gene Location: 3-386 bp Feature: gene Location: 526-2334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793-1615 bp Feature: domain Description: Intron_maturas2 Location: 1699-2017 bp Feature: domain Description: Intron_maturas2 Location: 1699-2017 bp Feature: domain Description: HNHc Note: nucleases Location: 2155-2308 bp Feature: domain Description: HNHc Note: nucleases Location: 2155-2308 bp Feature: gene Location: 2940-3899 bp Feature: gene Location: 3880-4269 bp Feature: domain Description: PrgI Location: 3898-4168 bp Feature: domain Description: PrgI Location: 3898-4168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666)

Seq: CAAGKH010000380.1 (6073 bp)
Overview 1 RT 1: 3840-6061 bp Neighborhood of RT #1 [3840, 6072] RVT-GII Feature: gene Location: 3840-4496 bp Feature: gene Location: 4763-5506 bp Feature: gene Location: 5758-6072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5881-6061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5881-6061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII