myRT

myRT report for GCA_900770835.1_SRS476348_79

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Seq: CAAGLQ010000150.1 (38742 bp)
Overview 1 RT 1: 20010-25700 bp Neighborhood of RT #1 [20010, 25774] Avd_like RVT-DGRs DUF1848 Feature: gene Location: 20010-20486 bp Feature: gene Location: 20483-20887 bp Feature: domain Description: Avd_like Location: 20534-20849 bp Feature: domain Description: Avd_like Location: 20534-20849 bp Feature: gene Location: 21236-22675 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21476-22229 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 476-22229 bp Feature: gene Location: 22854-24581 bp Feature: gene Location: 24713-25774 bp Feature: domain Description: DUF1848 Location: 24785-25700 bp Feature: domain Description: DUF1 848 Location: 24785-25700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF1848 (pfam08902)

Seq: CAAGLQ010000305.1 (3471 bp)
Overview 1 RT 1: 1-3287 bp Neighborhood of RT #1 [1, 3469] Glyco_hydro_20b GH20_chitobiase-like CHB_HEX_C_1 PA14 RVT-GII GIIM Feature: gene Location: 1-2415 bp Feature: domain Description: Glyco_hydro_20b Location: 169-559 bp Feature: domain Description: Glyco_hydro_2 0b Location: 169-559 bp Feature: domain Description: GH20_chitobiase-like Location: 571-1633 bp Feature: domain Description: GH2 0_chitobiase-like Location: 571-1633 bp Feature: domain Description: CHB_HEX_C_1 Location: 1753-1903 bp Feature: domain Description: CHB_HEX_C_1 Location: 1753-1903 bp Feature: domain Description: PA14 Location: 2113-2350 bp Feature: domain Description: PA14 Location: 2 113-2 350 bp Feature: gene Location: 2525-3469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528-3023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 8-302 3 bp Feature: domain Description: GIIM Note: maturase Location: 3080-3287 bp Feature: domain Description: GIIM Note: maturase Location: 3080-32 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_20b (pfam02838), GH20_chitobiase-like (cd06563), CHB_HEX_C_1 (pfam13290), PA14 (smart00758), RVT-GII, GIIM (pfam08388)

Seq: CAAGLQ010000137.1 (31258 bp)
Overview 1 RT 1: 3443-8533 bp Neighborhood of RT #1 [3443, 8556] SkfB GIIM RVT-GII HTH_24 NagC Feature: gene Location: 3443-4543 bp Feature: domain Description: SkfB Location: 3467-4304 bp Feature: domain Description: SkfB Location: 3 467-43 04 bp Feature: gene Location: 5176-5526 bp Feature: domain Description: GIIM Note: maturase Location: 5182-5353 bp Feature: domain Description: GIIM Note: maturase Location: 5182-53 53 bp Feature: gene Location: 5823-6200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5829-6192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5829-6192 bp Feature: gene Location: 6592-6837 bp Feature: gene Location: 7348-8556 bp Feature: domain Description: HTH_24 Location: 7405-7531 bp Feature: domain Description: HTH_24 Location: 7405-753 1 bp Feature: domain Description: NagC Location: 7591-8533 bp Feature: domain Description: NagC Location: 7591-853 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SkfB (COG0535), GIIM (pfam08388), RVT-GII, HTH_24 (pfam13412), NagC (COG1940)

Seq: CAAGLQ010000139.1 (9364 bp)
Overview 1 RT 1: 245-3666 bp Neighborhood of RT #1 [245, 4619] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III vWFA Feature: gene Location: 245-421 bp Feature: gene Location: 438-2708 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 648-1257 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 64 8-1257 bp Feature: domain Description: Cas1_I-II-III Location: 1710-2670 bp Feature: domain Description: Cas1_I-II-III Location: 1710-2670 bp Feature: gene Location: 2710-3000 bp Feature: domain Description: Cas2_I_II_III Location: 2734-2947 bp Feature: domain Description: Cas2_I_II_III Location: 2734 -294 7 bp Feature: gene Location: 3084-4619 bp Feature: domain Description: vWFA Location: 3234-3666 bp Feature: domain Description: vWFA Location: 3234 -3666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), vWFA (cl00057)

Seq: CAAGLQ010000185.1 (6462 bp)
Overview 1 RT 1: 1-2139 bp Neighborhood of RT #1 [1, 2139] RVT-GII GIIM Feature: gene Location: 1-150 bp Feature: gene Location: 469-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 847-1456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 847-145 6 bp Feature: domain Description: GIIM Note: maturase Location: 1510-1651 bp Feature: domain Description: GIIM Note: maturase Location: 15 10-165 1 bp Feature: gene Location: 1738-1881 bp Feature: gene Location: 1924-2139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGLQ010000131.1 (36793 bp)
Overview 1 RT 1: 12160-15549 bp Neighborhood of RT #1 [12160, 15549] RVT-DGRs Avd_like Feature: gene Location: 12160-12636 bp Feature: gene Location: 12653-12853 bp Feature: gene Location: 12992-14347 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13196-13940 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13196 -13940 bp Feature: gene Location: 14679-15044 bp Feature: domain Description: Avd_like Location: 14709-15024 bp Feature: domain Description: Avd_like Location: 14709-15024 bp Feature: gene Location: 15049-15549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)