myRT

myRT report for GCA_900771005.1_SRS476833_14

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Seq: CAAGMI010000087.1 (2417 bp)
Overview 1 RT 1: 3-2291 bp Neighborhood of RT #1 [3, 2291] Tex RVT-GII GIIM Feature: gene Location: 3-299 bp Feature: domain Description: Tex Location: 6-297 bp Feature: domain Description: Tex Location: 6-297 bp Feature: gene Location: 395-1813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1 367 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1652 bp Feature: domain Description: GIIM Note: maturase Location: 1 424-1 652 bp Feature: gene Location: 1911-2291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tex (COG2183), RVT-GII, GIIM (pfam08388)

Seq: CAAGMI010000055.1 (2518 bp)
Overview 1 RT 1: 1-2435 bp Neighborhood of RT #1 [1, 2435] zinc_ribbon_2 RVT-GII Feature: gene Location: 1-231 bp Feature: domain Description: zinc_ribbon_2 Location: 7-67 bp Feature: domain Description: zinc_ribbon_2 Location: 7-67 bp Feature: gene Location: 484-690 bp Feature: gene Location: 821-1837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139-1760 bp Feature: gene Location: 2127-2435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zinc_ribbon_2 (pfam13240), RVT-GII

Seq: CAAGMI010000058.1 (1601 bp)
Overview 1 RT 1: 98-1357 bp Neighborhood of RT #1 [98, 1357] RVT-GII Feature: gene Location: 98-1081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434-1052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 4-1052 bp Feature: gene Location: 1091-1357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAGMI010000049.1 (1623 bp)
Overview 1 RT 1: 2-1229 bp Neighborhood of RT #1 [2, 1447] RVT_N RVT-GII GIIM Feature: gene Location: 2-1447 bp Feature: domain Description: RVT_N Location: 11-254 bp Feature: domain Description: RVT_N Location: 11-254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-94 1 bp Feature: domain Description: GIIM Note: maturase Location: 998-1229 bp Feature: domain Description: GIIM Note: maturase Location: 998-1229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CAAGMI010000042.1 (3629 bp)
Overview 1 RT 1: 1-3489 bp Neighborhood of RT #1 [1, 3500] YhdJ HTH_XRE RVT-GII GIIM WbqC WbqC Feature: gene Location: 1-552 bp Feature: domain Description: YhdJ Location: 25-499 bp Feature: domain Description: YhdJ Location: 25 -499 bp Feature: gene Location: 539-964 bp Feature: domain Description: HTH_XRE Location: 686-854 bp Feature: domain Description: HTH_XRE Location: 686-85 4 bp Feature: gene Location: 966-2222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1170-1827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1170-1827 bp Feature: domain Description: GIIM Note: maturase Location: 1914-2130 bp Feature: domain Description: GIIM Note: maturase Location: 1914-2130 bp Feature: gene Location: 2618-2827 bp Feature: gene Location: 2868-3500 bp Feature: domain Description: WbqC Location: 2886-3267 bp Feature: domain Description: WbqC Location: 2886-3267 bp Feature: domain Description: WbqC Location: 3399-3489 bp Feature: domain Description: WbqC Location: 3399-3489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhdJ (COG0863), HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), WbqC (pfam08889)

Seq: CAAGMI010000333.1 (4559 bp)
Overview 1 RT 1: 345-4461 bp Neighborhood of RT #1 [345, 4556] RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve zf-CCHC Feature: gene Location: 345-485 bp Feature: gene Location: 543-3743 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1506-1707 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1506 -1707 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1995-2349 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1995-2349 bp Feature: domain Description: Integrase_H2C2 Location: 2652-2826 bp Feature: domain Description: Integrase_H2C2 Location: 26 52-2826 bp Feature: domain Description: rve Location: 2874-3213 bp Feature: domain Description: rve Location: 2874-3213 bp Feature: gene Location: 3815-4015 bp Feature: gene Location: 4119-4556 bp Feature: domain Description: zf-CCHC Location: 4413-4461 bp Feature: domain Description: zf-CCHC Location: 4413-446 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-DGRs/RVT-UG27/RVT-CRISPR(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), zf-CCHC (pfam00098)

Seq: CAAGMI010000236.1 (52704 bp)
Overview 1 RT 1: 28407-31470 bp Neighborhood of RT #1 [28407, 31470] RVT-Retrons ThiF Feature: gene Location: 28407-28583 bp Feature: gene Location: 28624-28770 bp Feature: gene Location: 28862-29893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29102-29669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29102-29669 bp Feature: gene Location: 29912-30553 bp Feature: domain Description: ThiF Location: 29915-30443 bp Feature: domain Description: ThiF Location: 29915-30443 bp Feature: gene Location: 30649-31470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ThiF (pfam00899)

Seq: CAAGMI010000182.1 (1054 bp)
Overview 1 RT 1: 3-918 bp Neighborhood of RT #1 [3, 1052] RVT-GII GIIM Feature: gene Location: 3-659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-627 bp Feature: gene Location: 693-1052 bp Feature: domain Description: GIIM Note: maturase Location: 696-918 bp Feature: domain Description: GIIM Note: maturase Location: 696-918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGMI010000349.1 (1475 bp)
Overview 1 RT 1: 1-1443 bp Neighborhood of RT #1 [1, 1472] RVT-GII Feature: gene Location: 1-279 bp Feature: gene Location: 459-1472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825-1443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825-1443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CAAGMI010000310.1 (4377 bp)
Overview 1 RT 1: 2-4026 bp Neighborhood of RT #1 [2, 4058] RVT-DGRs COG1373 COG3547 Feature: gene Location: 2-1120 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 248-962 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 248-962 bp Feature: gene Location: 1155-2531 bp Feature: domain Description: COG1373 Location: 1227-2334 bp Feature: domain Description: COG1373 Location: 1227-2334 bp Feature: gene Location: 2979-4058 bp Feature: domain Description: COG3547 Location: 3174-4026 bp Feature: domain Description: COG3547 Location: 3174-4026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, COG1373 (Predicted ATPase, AAA+ superfamily ), COG3547 (Transposase )

Seq: CAAGMI010000381.1 (1581 bp)
Overview 1 RT 1: 49-1270 bp Neighborhood of RT #1 [49, 1443] RVT-GII GIIM Feature: gene Location: 49-1443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-991 bp Feature: domain Description: GIIM Note: maturase Location: 1048-1270 bp Feature: domain Description: GIIM Note: maturase Location: 1048-1270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGMI010000357.1 (1892 bp)
Overview 1 RT 1: 349-1624 bp Neighborhood of RT #1 [349, 1797] RVT-GII GIIM Feature: gene Location: 349-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1345 bp Feature: domain Description: GIIM Note: maturase Location: 1399-1624 bp Feature: domain Description: GIIM Note: maturase Location: 1399-1624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGMI010000184.1 (17412 bp)
Overview 1 RT 1: 3457-9598 bp Neighborhood of RT #1 [3457, 9598] RVT-DGRs RVT-DGRs Feature: gene Location: 3457-4353 bp Feature: gene Location: 4365-4733 bp Feature: gene Location: 4768-5649 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4771-5104 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4771-5104 bp Feature: gene Location: 5764-6111 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5971-6109 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5971-6109 bp Feature: gene Location: 6540-8027 bp Feature: gene Location: 8045-9598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAGMI010000314.1 (1594 bp)
Overview 1 RT 1: 142-1390 bp Neighborhood of RT #1 [142, 1545] RVT-GII GIIM Feature: gene Location: 142-1131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484-1102 bp Feature: gene Location: 1165-1545 bp Feature: domain Description: GIIM Note: maturase Location: 1168-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1168-1390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGMI010000362.1 (2408 bp)
Overview 1 RT 1: 41-2406 bp Neighborhood of RT #1 [41, 2406] RVT-GII GIIM Feature: gene Location: 41-193 bp Feature: gene Location: 432-1769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1248 bp Feature: domain Description: GIIM Note: maturase Location: 1305-1515 bp Feature: domain Description: GIIM Note: maturase Location: 1305-15 15 bp Feature: gene Location: 2269-2406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGMI010000028.1 (1842 bp)
Overview 1 RT 1: 2-1488 bp Neighborhood of RT #1 [2, 1706] RVT_N RVT-GII GIIM Feature: gene Location: 2-379 bp Feature: gene Location: 204-1706 bp Feature: domain Description: RVT_N Location: 270-513 bp Feature: domain Description: RVT_N Location: 270-513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558-1200 bp Feature: domain Description: GIIM Note: maturase Location: 1257-1488 bp Feature: domain Description: GIIM Note: maturase Location: 1257-1488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)