myRT

myRT report for GCA_900771205.1_SRS476839_64

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Seq: CAAGNA010000230.1 (5200 bp)
Overview 1 RT 1: 3-5198 bp Neighborhood of RT #1 [3, 5198] FN3 Big_2 RVT-GII GIIM HTH_XRE Feature: gene Location: 3-2033 bp Feature: domain Description: FN3 Location: 1494-1695 bp Feature: domain Description: FN3 Location: 1 494-1 695 bp Feature: domain Description: Big_2 Location: 1782-2013 bp Feature: domain Description: Big_2 Location: 1 782-201 3 bp Feature: gene Location: 2177-2368 bp Feature: gene Location: 2676-4070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2994-3618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2994-361 8 bp Feature: domain Description: GIIM Note: maturase Location: 3675-3888 bp Feature: domain Description: GIIM Note: maturase Location: 3675-3888 bp Feature: gene Location: 4578-4769 bp Feature: domain Description: HTH_XRE Location: 4590-4758 bp Feature: domain Description: HTH_XRE Location: 4590-4758 bp Feature: gene Location: 4833-5198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), Big_2 (pfam02368), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: CAAGNA010000263.1 (1273 bp)
Overview 1 RT 1: 25-832 bp Neighborhood of RT #1 [25, 1272] RVT-UG27 Feature: gene Location: 25-1272 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 199-832 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 199-832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: CAAGNA010000776.1 (85751 bp)
Overview 1 RT 1: 40288-53364 bp Neighborhood of RT #1 [40288, 53375] Alanine_zipper Alanine_zipper Alanine_zipper DUF1566 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 40288-44838 bp Feature: domain Description: Alanine_zipper Location: 42088-42136 bp Feature: domain Description: Alanine_zipper Location: 42088-4213 6 bp Feature: domain Description: Alanine_zipper Location: 42421-42559 bp Feature: domain Description: Alanine_zipper Location: 42421-42559 bp Feature: domain Description: Alanine_zipper Location: 42781-42910 bp Feature: domain Description: Alanine_zipper Location: 42781-42910 bp Feature: gene Location: 44924-45274 bp Feature: gene Location: 45268-46713 bp Feature: domain Description: DUF1566 Location: 45343-45484 bp Feature: domain Description: DUF1566 Location: 453 43 -45484 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45673-46417 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45673 -46417 bp Feature: gene Location: 46728-47129 bp Feature: domain Description: Avd_like Location: 46767-47106 bp Feature: domain Description: Avd_like Location: 46767-47106 bp Feature: gene Location: 47349-53375 bp Feature: domain Description: DUF1566 Location: 53073-53364 bp Feature: domain Description: DUF1566 Location: 53 073 -53 3 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alanine_zipper (pfam11839), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: CAAGNA010000761.1 (1883 bp)
Overview 1 RT 1: 3-1648 bp Neighborhood of RT #1 [3, 1821] RVT-GII GIIM Feature: gene Location: 3-149 bp Feature: gene Location: 403-1821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 760-1375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 760-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1432-1648 bp Feature: domain Description: GIIM Note: maturase Location: 14 32-164 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CAAGNA010000249.1 (2013 bp)
Overview 1 RT 1: 1-1990 bp Neighborhood of RT #1 [1, 2010] RVT-DGRs Feature: gene Location: 1-462 bp Feature: gene Location: 660-914 bp Feature: gene Location: 1141-2010 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1351-1990 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 135 1-1990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CAAGNA010000808.1 (2681 bp)
Overview 1 RT 1: 72-2651 bp Neighborhood of RT #1 [72, 2680] GIIM RVT-GII Lys9 Feature: gene Location: 72-491 bp Feature: domain Description: GIIM Note: maturase Location: 99-330 bp Feature: domain Description: GIIM Note: maturase Location: 99-330 bp Feature: gene Location: 507-1469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1458 bp Feature: gene Location: 1940-2680 bp Feature: domain Description: Lys9 Location: 1949-2651 bp Feature: domain Description: Lys9 Location: 1949-26 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Lys9 (COG1748)

Seq: CAAGNA010000569.1 (2075 bp)
Overview 1 RT 1: 400-2073 bp Neighborhood of RT #1 [400, 2073] RVT-DGRs Feature: gene Location: 400-1842 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 613-1210 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 613-1210 bp Feature: gene Location: 1864-2073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs