myRT

myRT report for GCA_900773895.1_26141_1_284-3

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Seq: CAAGSI010000005.1 (210974 bp)
Overview 1 RT 1: 27550-30114 bp Neighborhood of RT #1 [27550, 30114] COG3547 RVT-GII Feature: gene Location: 27550-27681 bp Feature: gene Location: 27690-27839 bp Feature: domain Description: COG3547 Location: 27696-27816 bp Feature: domain Description: COG3547 Location: 27696-2781 6 bp Feature: gene Location: 27960-29138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28233-28965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28233-28965 bp Feature: gene Location: 29432-29803 bp Feature: gene Location: 29947-30114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: CAAGSI010000035.1 (28143 bp)
Overview 1 RT 1: 2347-6347 bp Neighborhood of RT #1 [2347, 6355] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2347-3708 bp Feature: domain Description: DcuC Location: 2350-3682 bp Feature: domain Description: DcuC Location: 2 350-3682 bp Feature: gene Location: 3761-4132 bp Feature: gene Location: 4354-4800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4660-4762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4660-4762 bp Feature: gene Location: 4848-4997 bp Feature: gene Location: 5324-6355 bp Feature: domain Description: Asparaginase_2 Location: 5414-6347 bp Feature: domain Description: Asparaginase_2 Location: 5414-6347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: CAAGSI010000026.1 (54209 bp)
Overview 1 RT 1: 19465-24613 bp Neighborhood of RT #1 [19465, 24613] psiB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 19465-19899 bp Feature: domain Description: psiB Location: 19468-19894 bp Feature: domain Description: psiB Location: 19468-19894 bp Feature: gene Location: 19952-21232 bp Feature: gene Location: 21424-23325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21691-22522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21691-22522 bp Feature: domain Description: Intron_maturas2 Location: 22636-22894 bp Feature: domain Description: Intron_maturas2 Location: 2263 6-22894 bp Feature: domain Description: HNHc Note: nucleases Location: 23068-23230 bp Feature: domain Description: HNHc Note: nucleases Location: 23 068-23 23 0 bp Feature: gene Location: 24067-24270 bp Feature: gene Location: 24347-24613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psiB (PRK13701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CAAGSI010000011.1 (161603 bp)
Overview 1 RT 1: 85948-92035 bp Neighborhood of RT #1 [85948, 92035] Psu PRK09678 RVT-UG8 RVT-UG3 PRK09692 Feature: gene Location: 85948-86502 bp Feature: domain Description: Psu Location: 85972-86482 bp Feature: domain Description: Psu Location: 85972-864 82 bp Feature: gene Location: 86504-86776 bp Feature: domain Description: PRK09678 Location: 86513-86681 bp Feature: domain Description: PRK09678 Location: 86513-86681 bp Feature: gene Location: 87225-89228 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 87720-88167 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 87720-88167 bp Feature: gene Location: 89232-90428 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 89517-89979 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 89517-89979 bp Feature: gene Location: 90430-91608 bp Feature: domain Description: PRK09692 Location: 90436-91594 bp Feature: domain Description: PRK09692 Location: 904 36-91594 bp Feature: gene Location: 91883-92035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional)