myRT

myRT report for GCA_900775015.1_25293_8_40-2

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Seq: CAAGWQ010000003.1 (439315 bp)
Overview 1 RT 1: 318236-325089 bp Neighborhood of RT #1 [318236, 325106] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 318236-318901 bp Feature: domain Description: INT_P4_C Location: 318341-318899 bp Feature: domain Description: INT_P4_C Location: 31 8341 -31 8899 bp Feature: gene Location: 319162-319602 bp Feature: domain Description: Integrase_1 Location: 319168-319384 bp Feature: domain Description: Integrase_1 Location: 31 91 68-31 9384 bp Feature: gene Location: 319659-321737 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 320067-320511 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 320067-32051 1 bp Feature: gene Location: 321737-324346 bp Feature: domain Description: FimD Location: 321794-324335 bp Feature: domain Description: FimD Location: 321 794-324335 bp Feature: gene Location: 324378-325106 bp Feature: domain Description: FimC Location: 324426-325089 bp Feature: domain Description: FimC Location: 324426-325089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: CAAGWQ010000005.1 (417889 bp)
Overview 1 RT 1: 825-4333 bp Neighborhood of RT #1 [825, 4530] RVT-GII PRK10276 Feature: gene Location: 825-1724 bp Feature: gene Location: 1971-2183 bp Feature: gene Location: 3051-3896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057-3504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057-3504 bp Feature: gene Location: 3986-4165 bp Feature: gene Location: 4213-4530 bp Feature: domain Description: PRK10276 Location: 4219-4333 bp Feature: domain Description: PRK102 76 Location: 42 19-4333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CAAGWQ010000039.1 (7526 bp)
Overview 1 RT 1: 2934-6855 bp Neighborhood of RT #1 [2934, 6855] umuC RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2934-4205 bp Feature: domain Description: umuC Location: 2937-4197 bp Feature: domain Description: umuC Location: 293 7-4197 bp Feature: gene Location: 4235-4531 bp Feature: gene Location: 4605-6320 bp Feature: domain Description: RVT_N Location: 4659-4902 bp Feature: domain Description: RVT_N Location: 4659-4902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4947-5598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4947-5598 bp Feature: domain Description: GIIM Note: maturase Location: 5652-5883 bp Feature: domain Description: GIIM Note: maturase Location: 5652-5883 bp Feature: domain Description: HNHc Note: nucleases Location: 6117-6273 bp Feature: domain Description: HNHc Note: nucleases Location: 6117-6273 bp Feature: gene Location: 6373-6549 bp Feature: gene Location: 6685-6855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)