myRT

myRT report for GCA_900775575.1_25293_8_91-2

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Seq: CAAGYU010000007.1 (218366 bp)
Overview 1 RT 1: 47941-52178 bp 2 RT 2: 180566-183430 bp Neighborhood of RT #1 [47941, 52216] HTH_21 PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [180566, 183450] COG3436 RVT-GII InsE PHA02517 Feature: gene Location: 47941-48126 bp Feature: domain Description: HTH_21 Location: 48028-48115 bp Feature: domain Description: HTH_21 Location: 48028-481 1 5 bp Feature: gene Location: 48157-48369 bp Feature: domain Description: PHA02517 Location: 48163-48304 bp Feature: domain Description: PHA0251 7 Location: 481 63-48304 bp Feature: gene Location: 48961-50484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49234-49966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49234-49966 bp Feature: domain Description: GIIM Note: maturase Location: 50080-50263 bp Feature: domain Description: GIIM Note: maturase Location: 50080-50263 bp Feature: gene Location: 50595-51101 bp Feature: domain Description: PHA02517 Location: 50598-50925 bp Feature: domain Description: PHA0251 7 Location: 50598-50925 bp Feature: gene Location: 51164-52216 bp Feature: domain Description: DDE_Tnp_IS66 Location: 51191-52046 bp Feature: domain Description: DDE_Tnp_IS66 Location: 51 1 91 -52046 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 52067-52178 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 52067-521 78 bp Feature: gene Location: 180566-181180 bp Feature: gene Location: 181056-181433 bp Feature: domain Description: COG3436 Location: 181062-181407 bp Feature: domain Description: COG3436 Location: 1 81 062-1 81 407 bp Feature: gene Location: 181931-182239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182144-182213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 821 44-1 8221 3 bp Feature: gene Location: 182282-182584 bp Feature: domain Description: InsE Location: 182291-182573 bp Feature: domain Description: InsE Location: 1 82291 -1 82573 bp Feature: gene Location: 182611-183450 bp Feature: domain Description: PHA02517 Location: 182635-183430 bp Feature: domain Description: PHA0251 7 Location: 1 82635-1 83430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase ), InsE (COG2963)