myRT

myRT report for GCA_900776445.1_27097_7_170-2

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Seq: CAAHCG010000018.1 (108563 bp)
Overview 1 RT 1: 14539-18246 bp 2 RT 2: 97204-104057 bp Neighborhood of RT #1 [14539, 18251] Tra5 PHA02517 RVT-GII GIIM PRK09413 Neighborhood of RT #2 [97204, 104074] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 14539-14997 bp Feature: domain Description: Tra5 Location: 14551-14974 bp Feature: domain Description: Tra5 Location: 1 4551 -1 4974 bp Feature: gene Location: 15011-15430 bp Feature: domain Description: PHA02517 Location: 15014-15422 bp Feature: domain Description: PHA0251 7 Location: 1 501 4-1 5422 bp Feature: gene Location: 15553-17076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15826-16558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5826-1 6558 bp Feature: domain Description: GIIM Note: maturase Location: 16672-16831 bp Feature: domain Description: GIIM Note: maturase Location: 1 6672-1 6831 bp Feature: gene Location: 17490-17741 bp Feature: gene Location: 17961-18251 bp Feature: domain Description: PRK09413 Location: 17964-18246 bp Feature: domain Description: PRK0941 3 Location: 1 7964-1 8246 bp Feature: gene Location: 97204-97869 bp Feature: domain Description: INT_P4_C Location: 97309-97867 bp Feature: domain Description: INT_P4_C Location: 97309-97867 bp Feature: gene Location: 98130-98570 bp Feature: domain Description: Integrase_1 Location: 98136-98352 bp Feature: domain Description: Integrase_1 Location: 981 36-98352 bp Feature: gene Location: 98627-100705 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 99035-99479 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 99035-99479 bp Feature: gene Location: 100705-103314 bp Feature: domain Description: FimD Location: 100762-103303 bp Feature: domain Description: FimD Location: 1 00762-1 03303 bp Feature: gene Location: 103346-104074 bp Feature: domain Description: FimC Location: 103379-104057 bp Feature: domain Description: FimC Location: 1 03379-1 04057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed), INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: CAAHCG010000002.1 (462323 bp)
Overview 1 RT 1: 457823-461872 bp Neighborhood of RT #1 [457823, 462264] PRK05433 RVT-GII Feature: gene Location: 457823-459622 bp Feature: domain Description: PRK05433 Location: 457826-459611 bp Feature: domain Description: PRK05433 Location: 45782 6-459611 bp Feature: gene Location: 460137-460376 bp Feature: gene Location: 460777-462264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461182-461872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461182 -461872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05433 (GTP-binding protein LepA; Provisional), RVT-GII